LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
PWRN3
hsa-miR-4677-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566797
Biotype: lincRNA
Gene id: ENSG00000260760
Gene Name: PWRN3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
777-802
0.051
1
6mer
285-302
0.008
1
PAX8-AS1
hsa-miR-4677-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000510859
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-173
0.046
Not Conserved
7mer
1868-1894
0.011
3
6mer
1284-1302
0.002
0
CTA-544A11.1
hsa-miR-4677-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4585-4592
0.020
1
6mer
228-254
0.006
3
7mer
7668-7686
0.005
1
6mer
11049-11072
0.005
7
7mer
2079-2091
0.005
3
6mer
330-345
0.003
1
6mer
5092-5106
0.003
3
6mer
2417-2435
0.002
1
6mer
10817-10833
0.002
0
6mer
9777-9789
0.002
2
6mer
10114-10136
0.002
0
6mer
3646-3650
0.002
1
6mer
8770-8796
0.002
0
6mer
1674-1689
0.001
0
6mer
4136-4153
0.001
2
XLOC_000633
hsa-miR-4677-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7165-7171
0.020
1
7mer
216-234
0.013
0
8mer
5700-5720
0.013
0
6mer
7323-7340
0.004
1
6mer
629-645
0.004
1
7mer
4619-4625
0.004
1
6mer
1390-1417
0.001
Not Conserved
RP11-231C18.2
hsa-miR-4677-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508241
Biotype: lincRNA
Gene id: ENSG00000248518
Gene Name: RP11-231C18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-92
0.051
1
6mer
28-33
0.008
1
CTD-2630F21.1
hsa-miR-4677-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592087
Biotype: antisense
Gene id: ENSG00000267309
Gene Name: CTD-2630F21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
308-330
0.059
1
XLOC_007841
hsa-miR-4677-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016472
Biotype: transcript isomorph
Gene id: XLOC_007841
Gene Name: XLOC_007841
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
109-129
0.058
1
LINC00856
hsa-miR-4677-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432742
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-48
0.058
6
RP11-53B5.1
hsa-miR-4677-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443771
Biotype: lincRNA
Gene id: ENSG00000231990
Gene Name: RP11-53B5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-120
0.051
1
6mer
195-219
0.004
1
6mer
275-287
0.003
0
LINC00856
hsa-miR-4677-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000423770
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-48
0.058
6
RP11-116O11.1
hsa-miR-4677-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510391
Biotype: antisense
Gene id: ENSG00000251294
Gene Name: RP11-116O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
996-1003
0.041
2
7mer
321-342
0.012
1
6mer
41-45
0.004
0
XLOC_003449
hsa-miR-4677-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007979
Biotype: transcript isomorph
Gene id: XLOC_003449
Gene Name: XLOC_003449
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-342
0.053
2
6mer
697-710
0.002
1
6mer
1651-1670
0.002
1
XLOC_001153
hsa-miR-4677-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001771
Biotype: transcript isomorph
Gene id: XLOC_001153
Gene Name: XLOC_001153
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1739-1751
0.035
Not Conserved
8mer
1123-1129
0.014
3
7mer
1415-1431
0.008
2
RP11-728E14.2
hsa-miR-4677-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582990
Biotype: lincRNA
Gene id: ENSG00000264023
Gene Name: RP11-728E14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-141
0.053
1
6mer
126-153
0.005
0
XLOC_004128
hsa-miR-4677-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007884
Biotype: transcript isomorph
Gene id: XLOC_004128
Gene Name: XLOC_004128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
416-435
0.058
0
AC093627.7
hsa-miR-4677-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465755
Biotype: lincRNA
Gene id: ENSG00000232325
Gene Name: AC093627.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
631-637
0.058
1
XLOC_010109
hsa-miR-4677-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020821
Biotype: transcript isomorph
Gene id: XLOC_010109
Gene Name: XLOC_010109
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-293
0.013
4
7mer
4778-4783
0.011
2
8mer
4641-4658
0.011
1
6mer
5270-5279
0.007
2
7mer
4371-4386
0.006
1
6mer
192-214
0.004
2
6mer
633-660
0.003
0
6mer
3200-3218
0.002
4
6mer
3148-3168
0.001
3
LINC00856
hsa-miR-4677-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000624665
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-116
0.055
6
6mer
560-570
0.002
1
XLOC_007808
hsa-miR-4677-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016443
Biotype: transcript isomorph
Gene id: XLOC_007808
Gene Name: XLOC_007808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
528-554
0.050
2
6mer
1306-1321
0.002
1
6mer
5687-5693
0.002
2
6mer
1490-1504
0.001
Not Conserved
6mer
2671-2692
0.001
1
LOC100128885
hsa-miR-4677-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2313-2327
0.024
0
8mer
1739-1756
0.016
0
7mer
3129-3142
0.011
0
6mer
2446-2472
0.002
0
6mer
2834-2854
0.002
0
6mer
2501-2518
0.001
0
6mer
2864-2879
0.001
0
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