LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-513N24.1
hsa-miR-4677-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568767
Biotype: lincRNA
Gene id: ENSG00000260695
Gene Name: RP11-513N24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
531-549
0.055
1
7mer
483-506
0.005
0
6mer
462-484
0.002
0
FAM74A6
hsa-miR-4677-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612305
Biotype: lincRNA
Gene id: ENSG00000274516
Gene Name: FAM74A6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1232-1238
0.030
0
7mer
1450-1470
0.020
0
7mer
114-137
0.008
0
6mer
577-599
0.003
0
RP11-243A14.1
hsa-miR-4677-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564305
Biotype: lincRNA
Gene id: ENSG00000261617
Gene Name: RP11-243A14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4775-4802
0.047
Not Conserved
6mer
985-992
0.003
1
7mer
2395-2400
0.002
0
6mer
2655-2675
0.002
0
6mer
2130-2134
0.002
0
6mer
2356-2360
0.001
0
6mer
2938-2942
0.001
Not Conserved
6mer
3180-3198
0.001
1
6mer
3018-3022
0.001
1
6mer
3256-3260
0.001
0
RP11-499F3.2
hsa-miR-4677-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560097
Biotype: lincRNA
Gene id: ENSG00000259692
Gene Name: RP11-499F3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
278-295
0.061
1
RP11-69H14.6
hsa-miR-4677-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619069
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-361
0.061
3
RP11-553L6.2
hsa-miR-4677-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493033
Biotype: antisense
Gene id: ENSG00000241490
Gene Name: RP11-553L6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
211-218
0.046
1
7mer
265-280
0.008
3
6mer
2942-2965
0.005
1
6mer
2075-2093
0.002
1
RP6-24A23.7
hsa-miR-4677-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-206
0.024
7
8mer
3932-3954
0.016
1
6mer
561-581
0.006
7
6mer
474-498
0.006
6
7mer
3912-3932
0.004
2
6mer
1237-1262
0.003
5
7mer
2754-2780
0.002
1
6mer
1340-1359
0.001
2
RP11-474I11.7
hsa-miR-4677-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585020
Biotype: antisense
Gene id: ENSG00000264270
Gene Name: RP11-474I11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-223
0.061
3
CTD-2009A10.1
hsa-miR-4677-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567227
Biotype: lincRNA
Gene id: ENSG00000260848
Gene Name: CTD-2009A10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-68
0.061
8
CTD-2555K7.2
hsa-miR-4677-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554857
Biotype: antisense
Gene id: ENSG00000258458
Gene Name: CTD-2555K7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-85
0.050
11
6mer
29-52
0.010
10
XLOC_007184
hsa-miR-4677-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015139
Biotype: transcript isomorph
Gene id: XLOC_007184
Gene Name: XLOC_007184
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-56
0.040
Not Conserved
7mer
89-95
0.021
3
AC009133.12
hsa-miR-4677-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563806
Biotype: antisense
Gene id: ENSG00000238045
Gene Name: AC009133.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-93
0.060
8
LINC00484
hsa-miR-4677-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423719
Biotype: lincRNA
Gene id: ENSG00000235641
Gene Name: LINC00484
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2896-2908
0.019
1
9mer
228-235
0.018
0
7mer
2270-2282
0.007
0
7mer
2605-2615
0.005
0
6mer
627-635
0.004
1
6mer
375-394
0.003
2
6mer
1204-1208
0.002
0
6mer
1640-1657
0.001
0
6mer
516-534
0.001
0
6mer
1286-1296
0.001
1
RP11-327I22.5
hsa-miR-4677-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000621949
Biotype: lincRNA
Gene id: ENSG00000278849
Gene Name: RP11-327I22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-228
0.045
0
6mer
569-573
0.015
0
RP11-499F3.2
hsa-miR-4677-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560054
Biotype: lincRNA
Gene id: ENSG00000259692
Gene Name: RP11-499F3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
278-295
0.060
1
CTD-3162L10.1
hsa-miR-4677-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586345
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-307
0.048
1
8mer
569-590
0.012
Not Conserved
CTD-2542C24.8
hsa-miR-4677-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598137
Biotype: lincRNA
Gene id: ENSG00000268326
Gene Name: CTD-2542C24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-145
0.031
0
7mer
157-181
0.029
0
MUC19
hsa-miR-4677-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2879-2885
0.007
6
7mer
21455-21473
0.007
Not Conserved
7mer
21012-21017
0.003
2
8mer
19750-19772
0.003
1
7mer
20644-20663
0.003
2
6mer
24029-24048
0.003
1
6mer
3593-3619
0.002
6
8mer
19007-19014
0.002
0
6mer
5578-5599
0.002
3
7mer
20005-20011
0.002
1
6mer
21971-21989
0.002
0
6mer
9493-9509
0.002
0
6mer
19674-19700
0.002
3
6mer
15490-15495
0.002
0
6mer
8647-8671
0.002
1
6mer
14470-14475
0.001
0
6mer
13630-13635
0.001
Not Conserved
6mer
18870-18888
0.001
0
6mer
23267-23282
0.001
1
6mer
22457-22469
0.001
1
6mer
16175-16185
0.001
Not Conserved
6mer
20207-20222
0.001
3
6mer
14997-15015
0.001
Not Conserved
6mer
12608-12618
0.001
Not Conserved
6mer
21623-21635
0.001
3
6mer
23372-23384
0.001
1
6mer
18978-18996
0.001
2
6mer
19194-19212
0.001
2
6mer
20262-20276
0.001
2
6mer
21113-21125
0.001
2
6mer
13690-13695
0.001
Not Conserved
6mer
21500-21527
0.000
1
6mer
22008-22034
0.000
0
XLOC_010582
hsa-miR-4677-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021980
Biotype: transcript isomorph
Gene id: XLOC_010582
Gene Name: XLOC_010582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4199-4211
0.053
2
7mer
1117-1136
0.006
1
6mer
1540-1560
0.001
1
LINC00540
hsa-miR-4677-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616974
Biotype: lincRNA
Gene id: ENSG00000276476
Gene Name: LINC00540
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1509-1530
0.040
2
7mer
254-275
0.010
1
6mer
1579-1602
0.003
2
6mer
1722-1728
0.003
2
6mer
1170-1180
0.002
1
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