LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_004362
hsa-miR-4677-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009934
Biotype: transcript isomorph
Gene id: XLOC_004362
Gene Name: XLOC_004362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7383-7409
0.029
1
7mer
177-189
0.021
1
6mer
921-937
0.005
2
6mer
2270-2285
0.002
1
6mer
1107-1119
0.002
1
6mer
6827-6831
0.002
0
6mer
5182-5201
0.002
0
6mer
4688-4706
0.001
0
RP11-496H1.2
hsa-miR-4677-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608482
Biotype: lincRNA
Gene id: ENSG00000273308
Gene Name: RP11-496H1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
43-61
0.064
0
HOTAIR
hsa-miR-4677-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_003716.3
Biotype: lincRNA
Gene id: NR_003716.3 (gene)
Gene Name: HOTAIR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-250
0.043
1
8mer
1633-1656
0.015
2
6mer
450-469
0.004
1
6mer
673-690
0.002
3
CTA-342B11.3
hsa-miR-4677-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19188-19202
0.025
1
8mer
2808-2822
0.010
1
8mer
8303-8326
0.009
0
7mer
6975-6985
0.006
0
7mer
8765-8789
0.005
0
8mer
22491-22499
0.005
Not Conserved
6mer
17195-17199
0.002
1
6mer
3396-3420
0.002
1
6mer
4821-4838
0.000
0
XLOC_002801
hsa-miR-4677-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006206
Biotype: transcript isomorph
Gene id: XLOC_002801
Gene Name: XLOC_002801
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
20-47
0.063
1
PAX8-AS1
hsa-miR-4677-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000616073
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-157
0.063
Not Conserved
LINC01085
hsa-miR-4677-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502759
Biotype: lincRNA
Gene id: ENSG00000248698
Gene Name: LINC01085
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1854-1876
0.049
0
7mer
1187-1209
0.008
1
7mer
692-704
0.006
2
RP11-86H7.7
hsa-miR-4677-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435559
Biotype: lincRNA
Gene id: ENSG00000235565
Gene Name: RP11-86H7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-214
0.025
2
8mer
1951-1969
0.017
0
7mer
1631-1646
0.015
4
6mer
619-639
0.004
2
6mer
1598-1614
0.002
1
HOTAIR
hsa-miR-4677-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000424518
Biotype: antisense
Gene id: ENSG00000228630
Gene Name: HOTAIR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-250
0.043
1
8mer
1633-1656
0.014
2
6mer
450-469
0.004
1
6mer
673-690
0.002
3
RP11-474I11.7
hsa-miR-4677-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582093
Biotype: antisense
Gene id: ENSG00000264270
Gene Name: RP11-474I11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-228
0.063
3
LINC01135
hsa-miR-4677-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_108106.1
Biotype: lincRNA
Gene id: NR_108106.1 (gene)
Gene Name: LINC01135
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
611-631
0.063
3
SNAP47-AS1
hsa-miR-4677-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413347
Biotype: antisense
Gene id: ENSG00000230005
Gene Name: SNAP47-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1286-1313
0.057
1
6mer
209-230
0.003
0
6mer
793-801
0.002
0
DNM3OS
hsa-miR-4677-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103486.1
Biotype: antisense
Gene id: NR_103486.1 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-360
0.042
1
6mer
3978-3988
0.012
10
6mer
1947-1951
0.003
12
6mer
3369-3373
0.003
1
6mer
2758-2780
0.002
1
RBM26-AS1
hsa-miR-4677-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456602
Biotype: antisense
Gene id: ENSG00000227354
Gene Name: RBM26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1608-1629
0.018
1
9mer
1213-1237
0.017
2
8mer
535-546
0.013
0
6mer
1639-1655
0.005
2
6mer
1167-1188
0.005
1
6mer
1379-1390
0.004
2
LINC00692
hsa-miR-4677-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496997
Biotype: processed_transcript
Gene id: ENSG00000230891
Gene Name: LINC00692
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-232
0.057
0
6mer
499-511
0.005
1
AP000344.3
hsa-miR-4677-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428415
Biotype: lincRNA
Gene id: ENSG00000234928
Gene Name: AP000344.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-42
0.033
1
7mer
165-191
0.029
1
IBA57-AS1
hsa-miR-4677-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000366713
Biotype: lincRNA
Gene id: ENSG00000203684
Gene Name: IBA57-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-410
0.062
1
PWRN1
hsa-miR-4677-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564898
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-142
0.042
1
7mer
294-309
0.020
1
RP11-693J15.5
hsa-miR-4677-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4018-4036
0.018
1
8mer
1922-1928
0.011
1
6mer
10434-10456
0.005
2
6mer
898-921
0.005
5
7mer
5147-5162
0.005
1
7mer
934-951
0.004
1
6mer
10381-10402
0.003
0
6mer
245-267
0.002
0
6mer
1166-1189
0.002
Not Conserved
6mer
2520-2541
0.002
1
6mer
6808-6826
0.002
1
6mer
1635-1653
0.001
1
6mer
8963-8985
0.001
0
6mer
1686-1690
0.001
1
6mer
6450-6466
0.000
Not Conserved
RP4-610C12.4
hsa-miR-4677-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000380888
Biotype: lincRNA
Gene id: ENSG00000205611
Gene Name: RP4-610C12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
504-520
0.025
0
9mer
674-690
0.024
Not Conserved
9mer
1184-1200
0.010
Not Conserved
6mer
2472-2493
0.002
Not Conserved
6mer
1105-1111
0.001
Not Conserved
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