LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP5-837M10.4
hsa-miR-4677-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432210
Biotype: antisense
Gene id: ENSG00000228086
Gene Name: RP5-837M10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
443-458
0.065
6
6mer
113-119
0.004
2
AC012123.1
hsa-miR-4677-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000426194
Biotype: antisense
Gene id: ENSG00000228835
Gene Name: AC012123.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
640-655
0.068
10
RP11-340A13.1
hsa-miR-4677-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512911
Biotype: lincRNA
Gene id: ENSG00000249382
Gene Name: RP11-340A13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-19
0.062
1
6mer
508-523
0.006
0
XLOC_013690
hsa-miR-4677-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028641
Biotype: transcript isomorph
Gene id: XLOC_013690
Gene Name: XLOC_013690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
585-591
0.019
1
6mer
895-899
0.009
2
7mer
536-542
0.008
0
6mer
787-791
0.006
1
6mer
1130-1134
0.006
0
6mer
734-738
0.005
1
6mer
943-947
0.005
0
6mer
528-532
0.004
1
6mer
683-687
0.003
0
6mer
655-661
0.003
0
XLOC_003031
hsa-miR-4677-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007109
Biotype: transcript isomorph
Gene id: XLOC_003031
Gene Name: XLOC_003031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-15
0.059
0
7mer
148-159
0.008
0
XLOC_013093
hsa-miR-4677-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027051
Biotype: transcript isomorph
Gene id: XLOC_013093
Gene Name: XLOC_013093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-113
0.059
1
6mer
468-472
0.008
1
CTD-2291D10.2
hsa-miR-4677-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000565584
Biotype: lincRNA
Gene id: ENSG00000261558
Gene Name: CTD-2291D10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-71
0.038
0
7mer
344-361
0.029
0
LINC01135
hsa-miR-4677-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419531
Biotype: lincRNA
Gene id: ENSG00000234807
Gene Name: LINC01135
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
904-924
0.067
3
RP11-276E17.2
hsa-miR-4677-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426519
Biotype: lincRNA
Gene id: ENSG00000234142
Gene Name: RP11-276E17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
524-543
0.057
1
7mer
256-270
0.010
0
XLOC_001668
hsa-miR-4677-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4236-4243
0.039
1
6mer
360-380
0.014
1
6mer
4933-4952
0.009
1
6mer
4584-4588
0.006
1
FLJ26245
hsa-miR-4677-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566900
Biotype: lincRNA
Gene id: ENSG00000261122
Gene Name: FLJ26245
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
761-779
0.034
0
7mer
940-949
0.033
0
XLOC_006092
hsa-miR-4677-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014132
Biotype: transcript isomorph
Gene id: XLOC_006092
Gene Name: XLOC_006092
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
159-182
0.049
1
6mer
461-470
0.017
1
XLOC_009389
hsa-miR-4677-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019588
Biotype: transcript isomorph
Gene id: XLOC_009389
Gene Name: XLOC_009389
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1641-1663
0.058
2
7mer
1681-1703
0.009
1
XLOC_007290
hsa-miR-4677-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015925
Biotype: transcript isomorph
Gene id: XLOC_007290
Gene Name: XLOC_007290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1440-1460
0.030
0
7mer
49-55
0.019
3
7mer
1316-1326
0.009
Not Conserved
6mer
558-562
0.004
1
6mer
645-661
0.004
4
AC137932.6
hsa-miR-4677-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565667
Biotype: antisense
Gene id: ENSG00000261253
Gene Name: AC137932.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-377
0.060
1
6mer
773-798
0.005
1
XLOC_007035
hsa-miR-4677-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18537-18542
0.008
Not Conserved
7mer
16030-16035
0.006
0
8mer
8927-8944
0.005
0
7mer
12512-12517
0.003
0
7mer
9026-9033
0.003
0
7mer
15263-15268
0.002
0
6mer
2301-2307
0.002
1
6mer
11099-11103
0.002
0
7mer
13521-13526
0.002
0
6mer
14069-14083
0.002
0
6mer
8649-8669
0.002
1
7mer
11621-11648
0.002
1
6mer
11841-11862
0.002
1
6mer
15412-15416
0.002
0
6mer
3016-3021
0.002
1
6mer
6674-6691
0.002
1
6mer
13016-13020
0.002
0
6mer
13660-13665
0.001
0
6mer
1711-1726
0.001
3
6mer
12323-12328
0.001
0
6mer
12086-12108
0.001
1
6mer
14511-14528
0.001
Not Conserved
6mer
3974-3979
0.001
1
6mer
16268-16273
0.001
Not Conserved
6mer
14365-14370
0.001
0
6mer
7683-7702
0.001
0
6mer
12875-12880
0.001
0
6mer
12575-12599
0.001
0
6mer
1524-1546
0.001
1
6mer
12723-12734
0.001
0
6mer
9140-9149
0.001
0
7mer
7670-7690
0.001
0
6mer
13584-13608
0.001
0
6mer
12799-12804
0.001
0
6mer
13995-13999
0.001
0
RP11-613D13.8
hsa-miR-4677-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501541
Biotype: lincRNA
Gene id: ENSG00000244953
Gene Name: RP11-613D13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-63
0.063
7
6mer
1138-1156
0.002
2
PAX8-AS1
hsa-miR-4677-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617509
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-167
0.065
Not Conserved
RP11-473M20.9
hsa-miR-4677-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577123
Biotype: lincRNA
Gene id: ENSG00000262370
Gene Name: RP11-473M20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
621-648
0.044
0
7mer
492-497
0.021
0
RP11-309M7.1
hsa-miR-4677-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000565664
Biotype: lincRNA
Gene id: ENSG00000261298
Gene Name: RP11-309M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1012-1022
0.051
1
7mer
42-61
0.014
1
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