LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-403B2.6
hsa-miR-4677-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559621
Biotype: lincRNA
Gene id: ENSG00000259383
Gene Name: RP11-403B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-412
0.030
0
6mer
679-697
0.023
0
6mer
268-288
0.011
0
6mer
603-621
0.010
0
6mer
255-259
0.002
Not Conserved
RP4-671O14.7
hsa-miR-4677-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
17648-17660
0.020
1
8mer
11257-11280
0.010
1
6mer
181-188
0.006
1
7mer
12258-12274
0.006
1
7mer
18148-18159
0.005
1
6mer
19041-19067
0.004
1
7mer
17022-17033
0.003
0
7mer
2783-2804
0.003
2
7mer
12441-12459
0.003
1
6mer
18255-18269
0.002
2
6mer
4964-4990
0.002
2
6mer
11531-11552
0.002
2
6mer
11949-11967
0.002
1
8mer
10440-10455
0.002
1
6mer
9598-9614
0.002
0
6mer
15945-15955
0.001
0
6mer
9125-9142
0.001
0
6mer
10455-10465
0.001
Not Conserved
6mer
17558-17564
0.001
1
6mer
11129-11141
0.001
0
RP11-6N13.4
hsa-miR-4677-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523745
Biotype: lincRNA
Gene id: ENSG00000253776
Gene Name: RP11-6N13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-41
0.043
1
7mer
286-306
0.032
1
LINC00856
hsa-miR-4677-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434974
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-108
0.055
6
6mer
2580-2599
0.006
4
7mer
1954-1966
0.005
1
7mer
1650-1656
0.003
1
6mer
965-981
0.002
2
6mer
2279-2302
0.002
1
7mer
1695-1708
0.002
1
RP11-1109M24.16
hsa-miR-4677-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579836
Biotype: lincRNA
Gene id: ENSG00000263609
Gene Name: RP11-1109M24.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
48-66
0.074
0
XLOC_013553
hsa-miR-4677-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028205
Biotype: transcript isomorph
Gene id: XLOC_013553
Gene Name: XLOC_013553
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6734-6745
0.060
1
6mer
490-509
0.007
1
6mer
1836-1859
0.005
2
6mer
4189-4214
0.001
Not Conserved
TTN-AS1
hsa-miR-4677-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590773
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-152
0.073
7
XLOC_003837
hsa-miR-4677-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008980
Biotype: transcript isomorph
Gene id: XLOC_003837
Gene Name: XLOC_003837
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-236
0.011
0
8mer
74-92
0.010
0
8mer
251-257
0.010
0
8mer
188-194
0.010
0
8mer
209-215
0.009
0
8mer
125-131
0.006
Not Conserved
8mer
167-173
0.006
Not Conserved
8mer
146-152
0.005
Not Conserved
8mer
91-110
0.005
Not Conserved
RP11-34P13.13
hsa-miR-4677-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1005-1024
0.047
0
7mer
3842-3864
0.010
0
6mer
3008-3027
0.006
1
6mer
1802-1827
0.005
1
6mer
671-697
0.003
0
XLOC_002903
hsa-miR-4677-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006302
Biotype: transcript isomorph
Gene id: XLOC_002903
Gene Name: XLOC_002903
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-318
0.040
0
6mer
396-416
0.012
1
6mer
291-301
0.007
0
6mer
484-493
0.006
0
6mer
153-169
0.006
0
XLOC_010290
hsa-miR-4677-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-85
0.044
0
7mer
88-114
0.026
0
LINC00421
hsa-miR-4677-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-85
0.044
0
7mer
88-114
0.026
0
AC012668.1
hsa-miR-4677-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431727
Biotype: lincRNA
Gene id: ENSG00000234938
Gene Name: AC012668.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-178
0.070
6
RP11-216M21.7
hsa-miR-4677-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2853-2863
0.026
0
6mer
3159-3173
0.018
0
6mer
266-291
0.011
0
6mer
2610-2628
0.008
0
6mer
2045-2072
0.008
0
RP11-382A20.5
hsa-miR-4677-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566841
Biotype: antisense
Gene id: ENSG00000259805
Gene Name: RP11-382A20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-326
0.037
1
8mer
388-400
0.029
1
6mer
31-45
0.005
1
XLOC_006122
hsa-miR-4677-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-726
0.028
0
8mer
221-240
0.023
0
6mer
674-679
0.019
1
DIAPH2-AS1
hsa-miR-4677-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000439759
Biotype: antisense
Gene id: ENSG00000236256
Gene Name: DIAPH2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-208
0.064
6
6mer
614-639
0.006
1
DNM3OS
hsa-miR-4677-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-360
0.043
1
6mer
7884-7894
0.012
10
6mer
7560-7576
0.007
10
6mer
1947-1951
0.003
12
6mer
2758-2780
0.002
1
6mer
3369-3373
0.002
1
6mer
4980-4995
0.002
1
LINC01482
hsa-miR-4677-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587999
Biotype: lincRNA
Gene id: ENSG00000267659
Gene Name: LINC01482
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-358
0.029
1
7mer
557-578
0.024
1
7mer
233-249
0.016
1
RP11-1070N10.7
hsa-miR-4677-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602953
Biotype: lincRNA
Gene id: ENSG00000270038
Gene Name: RP11-1070N10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-104
0.032
2
7mer
44-59
0.026
1
6mer
465-483
0.006
1
6mer
292-298
0.005
0
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