LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-206L10.9
hsa-miR-4677-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587530
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
875-890
0.073
1
6mer
342-350
0.005
1
6mer
398-402
0.004
1
RP1-59M18.2
hsa-miR-4677-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525523
Biotype: processed_transcript
Gene id: ENSG00000255448
Gene Name: RP1-59M18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-136
0.057
6
7mer
268-293
0.020
8
6mer
298-319
0.005
7
XLOC_006459
hsa-miR-4677-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014308
Biotype: transcript isomorph
Gene id: XLOC_006459
Gene Name: XLOC_006459
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-178
0.044
0
7mer
1357-1379
0.017
0
7mer
1472-1485
0.011
0
6mer
1497-1511
0.008
0
6mer
936-957
0.003
0
XLOC_008301
hsa-miR-4677-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017580
Biotype: transcript isomorph
Gene id: XLOC_008301
Gene Name: XLOC_008301
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1083-1103
0.053
0
6mer
1220-1238
0.017
0
6mer
1175-1179
0.013
0
TTTY4
hsa-miR-4677-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000436568
Biotype: lincRNA
Gene id: ENSG00000226906
Gene Name: TTTY4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1083-1103
0.053
0
6mer
1220-1238
0.017
0
6mer
1175-1179
0.013
0
XLOC_008332
hsa-miR-4677-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017595
Biotype: transcript isomorph
Gene id: XLOC_008332
Gene Name: XLOC_008332
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-263
0.053
0
6mer
108-126
0.017
0
6mer
167-171
0.013
0
TTTY4B
hsa-miR-4677-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1083-1103
0.053
0
6mer
1220-1238
0.017
0
6mer
1175-1179
0.013
0
TTTY4C
hsa-miR-4677-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000456123
Biotype: lincRNA
Gene id: ENSG00000228296
Gene Name: TTTY4C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-264
0.053
0
6mer
109-127
0.017
0
6mer
168-172
0.013
0
XLOC_008302
hsa-miR-4677-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017581
Biotype: transcript isomorph
Gene id: XLOC_008302
Gene Name: XLOC_008302
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1083-1103
0.053
0
6mer
1220-1238
0.017
0
6mer
1175-1179
0.012
0
XLOC_001751
hsa-miR-4677-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003048
Biotype: transcript isomorph
Gene id: XLOC_001751
Gene Name: XLOC_001751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-108
0.055
1
6mer
1441-1459
0.009
1
6mer
1274-1298
0.008
1
6mer
1559-1572
0.008
1
6mer
482-497
0.002
Not Conserved
AC226118.1
hsa-miR-4677-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_033960.1
Biotype: lincRNA
Gene id: NR_033960.1 (gene)
Gene Name: AC226118.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2084-2107
0.066
0
6mer
1660-1685
0.004
0
6mer
1735-1739
0.003
0
6mer
1498-1509
0.003
0
6mer
825-842
0.003
0
6mer
1707-1718
0.003
0
MIR99AHG
hsa-miR-4677-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000400178
Biotype: lincRNA
Gene id: ENSG00000215386
Gene Name: MIR99AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-69
0.081
9
MIR99AHG
hsa-miR-4677-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000602935
Biotype: lincRNA
Gene id: ENSG00000215386
Gene Name: MIR99AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-104
0.081
9
CTD-2017D11.1
hsa-miR-4677-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
910-920
0.069
1
6mer
437-453
0.012
1
RP11-1109M24.16
hsa-miR-4677-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580507
Biotype: lincRNA
Gene id: ENSG00000263609
Gene Name: RP11-1109M24.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
141-167
0.080
0
AC009133.12
hsa-miR-4677-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569981
Biotype: antisense
Gene id: ENSG00000238045
Gene Name: AC009133.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-106
0.061
8
7mer
658-676
0.005
4
6mer
513-520
0.004
4
7mer
1739-1763
0.003
0
6mer
2129-2148
0.003
Not Conserved
7mer
1730-1738
0.002
0
LL22NC03-86G7.1
hsa-miR-4677-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32683-32707
0.010
1
8mer
22068-22074
0.005
0
7mer
7191-7198
0.005
1
7mer
1235-1241
0.004
2
7mer
4815-4830
0.003
1
6mer
28879-28905
0.003
9
7mer
29401-29426
0.003
0
8mer
17591-17604
0.003
1
7mer
28044-28067
0.003
2
8mer
12439-12454
0.003
1
7mer
24947-24964
0.003
1
7mer
5628-5637
0.002
0
6mer
34585-34608
0.002
9
6mer
7899-7917
0.002
1
6mer
16024-16043
0.002
4
6mer
27250-27276
0.001
2
6mer
28697-28706
0.001
2
6mer
32950-32954
0.001
1
6mer
22915-22938
0.001
0
6mer
29272-29289
0.001
1
6mer
27559-27585
0.001
2
6mer
15487-15492
0.001
1
6mer
13322-13328
0.001
1
6mer
18492-18518
0.001
1
6mer
34899-34919
0.001
1
6mer
20935-20959
0.001
2
7mer
7322-7342
0.001
0
6mer
21566-21583
0.001
1
6mer
20778-20790
0.001
0
7mer
7989-8012
0.001
1
6mer
27727-27743
0.001
1
6mer
14201-14214
0.001
0
6mer
9014-9018
0.001
0
6mer
10218-10242
0.001
1
6mer
22414-22436
0.001
0
6mer
1231-1248
0.001
4
6mer
5653-5675
0.001
2
6mer
14281-14300
0.001
0
6mer
32948-32971
0.000
1
AC006116.19
hsa-miR-4677-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591936
Biotype: sense_intronic
Gene id: ENSG00000267298
Gene Name: AC006116.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-65
0.077
0
XLOC_013012
hsa-miR-4677-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026954
Biotype: transcript isomorph
Gene id: XLOC_013012
Gene Name: XLOC_013012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-401
0.076
1
RP11-664I21.5
hsa-miR-4677-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524453
Biotype: antisense
Gene id: ENSG00000254568
Gene Name: RP11-664I21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
499-524
0.067
3
7mer
728-734
0.009
1
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