LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
TSPAN9-IT1
hsa-miR-4677-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539784
Biotype: sense_intronic
Gene id: ENSG00000256197
Gene Name: TSPAN9-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-499
0.097
9
RP11-20F24.2
hsa-miR-4677-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436077
Biotype: lincRNA
Gene id: ENSG00000234918
Gene Name: RP11-20F24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
279-286
0.095
1
RP11-342K6.1
hsa-miR-4677-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604845
Biotype: antisense
Gene id: ENSG00000270696
Gene Name: RP11-342K6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1498-1513
0.058
1
9mer
441-453
0.037
0
RP11-400K9.3
hsa-miR-4677-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521930
Biotype: lincRNA
Gene id: ENSG00000254204
Gene Name: RP11-400K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-153
0.095
1
XLOC_003171
hsa-miR-4677-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006548
Biotype: transcript isomorph
Gene id: XLOC_003171
Gene Name: XLOC_003171
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-509
0.054
0
7mer
340-350
0.040
1
MIR6818
hsa-miR-4677-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24317-24341
0.022
0
7mer
6752-6757
0.007
3
7mer
34331-34352
0.005
1
8mer+wobble
15926-15946
0.004
0
7mer
27407-27424
0.004
0
6mer
30083-30088
0.004
10
6mer
3882-3897
0.003
5
7mer
2138-2154
0.003
0
6mer
33463-33487
0.003
7
6mer
48556-48563
0.003
1
6mer
22000-22017
0.002
2
6mer
9002-9029
0.002
4
7mer
46292-46308
0.002
2
7mer
22545-22566
0.002
0
6mer
45453-45464
0.002
3
6mer
16304-16310
0.002
0
6mer
23814-23827
0.002
1
6mer
48403-48413
0.002
1
6mer
26000-26016
0.002
4
7mer
39394-39403
0.002
1
6mer
40570-40590
0.002
4
6mer
23437-23456
0.002
1
6mer
26218-26222
0.001
0
6mer
15044-15060
0.001
Not Conserved
6mer
41400-41421
0.001
4
6mer
32765-32786
0.001
3
6mer
39428-39442
0.001
2
6mer
27270-27274
0.001
1
6mer
25398-25425
0.001
0
6mer
20583-20591
0.001
0
6mer
44557-44577
0.001
1
6mer
28940-28959
0.001
1
6mer
4885-4912
0.001
0
6mer
8340-8354
0.001
0
6mer
20572-20589
0.001
1
6mer
16234-16245
0.001
0
6mer
2108-2130
0.000
0
6mer
8322-8341
0.000
Not Conserved
6mer
2040-2066
0.000
0
CTBP1-AS2
hsa-miR-4677-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1989-2014
0.082
1
6mer
1886-1903
0.011
1
RP5-1021I20.5
hsa-miR-4677-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554009
Biotype: antisense
Gene id: ENSG00000258891
Gene Name: RP5-1021I20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3-15
0.092
1
RP11-15H20.6
hsa-miR-4677-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2132-2148
0.028
0
7mer
2190-2207
0.013
0
6mer
248-268
0.012
1
7mer
580-594
0.010
0
6mer
1899-1919
0.009
1
6mer
310-330
0.008
1
6mer
367-393
0.006
0
7mer
924-947
0.006
0
CTA-414D7.1
hsa-miR-4677-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
13122-13140
0.004
1
7mer
2126-2139
0.004
1
6mer
13004-13030
0.003
1
6mer
12952-12956
0.003
1
6mer
13155-13177
0.003
Not Conserved
6mer
12975-12993
0.003
0
6mer
12827-12845
0.002
1
6mer
12804-12808
0.002
0
6mer
12897-12919
0.002
Not Conserved
6mer
12749-12771
0.002
0
6mer
12642-12660
0.002
1
6mer
12675-12697
0.002
1
6mer
12564-12586
0.002
1
6mer
12471-12475
0.002
1
6mer
6090-6095
0.001
0
6mer
12619-12623
0.001
Not Conserved
6mer
12490-12512
0.001
0
6mer
8722-8741
0.001
1
6mer
3702-3716
0.001
0
6mer
9961-9983
0.001
0
6mer
12383-12401
0.001
0
6mer
9807-9831
0.001
0
6mer
12165-12183
0.001
1
6mer
12416-12438
0.001
Not Conserved
6mer
12268-12290
0.001
0
6mer
12342-12364
0.001
Not Conserved
6mer
12124-12146
0.001
1
6mer
11593-11611
0.001
0
6mer
12235-12253
0.001
0
6mer
12091-12109
0.001
1
6mer
12198-12220
0.001
0
6mer
12054-12072
0.001
1
6mer
6367-6388
0.001
1
6mer
6148-6168
0.001
Not Conserved
6mer
2549-2564
0.001
0
6mer
1602-1624
0.001
1
6mer
10039-10057
0.001
1
6mer
10763-10781
0.001
1
6mer
10150-10168
0.001
1
6mer
10397-10415
0.001
1
6mer
10508-10526
0.001
1
6mer
10290-10308
0.001
1
6mer
10977-10999
0.001
0
6mer
10072-10094
0.001
1
6mer
11121-11143
0.001
1
6mer
10467-10489
0.001
1
6mer
11770-11788
0.001
0
6mer
11483-11501
0.001
0
6mer
11018-11036
0.001
0
6mer
10360-10382
0.001
1
6mer
10434-10452
0.001
0
6mer
10689-10707
0.001
0
6mer
11980-11998
0.001
0
6mer
10578-10596
0.001
0
6mer
11339-11357
0.001
0
6mer
11910-11928
0.001
0
6mer
10837-10855
0.001
0
6mer
10870-10888
0.001
0
6mer
12013-12035
0.001
1
6mer
10113-10131
0.001
0
6mer
11088-11106
0.001
0
6mer
11836-11854
0.001
0
6mer
11265-11283
0.001
0
6mer
11943-11965
0.001
0
6mer
10541-10559
0.001
0
6mer
11372-11394
0.001
0
6mer
11869-11891
0.001
0
6mer
11298-11320
0.001
0
6mer
11409-11427
0.001
0
6mer
11195-11213
0.001
0
6mer
10323-10345
0.001
0
6mer
9998-10020
0.001
0
6mer
11051-11073
0.001
0
6mer
10722-10744
0.001
0
6mer
10903-10925
0.001
0
6mer
11232-11250
0.001
Not Conserved
6mer
10796-10818
0.001
0
6mer
10183-10205
0.001
0
6mer
11442-11464
0.001
0
6mer
11659-11681
0.001
Not Conserved
6mer
10652-10670
0.001
Not Conserved
6mer
11803-11821
0.001
Not Conserved
6mer
11733-11751
0.001
Not Conserved
6mer
11626-11644
0.001
Not Conserved
6mer
10224-10242
0.001
Not Conserved
6mer
11162-11180
0.001
Not Conserved
6mer
10611-10633
0.001
Not Conserved
6mer
10257-10275
0.001
Not Conserved
6mer
11700-11718
0.001
Not Conserved
RP11-664D1.1
hsa-miR-4677-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545163
Biotype: antisense
Gene id: ENSG00000256862
Gene Name: RP11-664D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-142
0.091
2
MIR99AHG
hsa-miR-4677-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000602580
Biotype: lincRNA
Gene id: ENSG00000215386
Gene Name: MIR99AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-96
0.089
9
MIR99AHG
hsa-miR-4677-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000619222
Biotype: lincRNA
Gene id: ENSG00000215386
Gene Name: MIR99AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-96
0.089
9
LINC00293
hsa-miR-4677-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1872-1892
0.047
1
6mer
1943-1969
0.013
1
6mer
1714-1741
0.011
1
6mer
451-476
0.010
1
6mer
1293-1308
0.005
0
6mer
1005-1023
0.003
0
XLOC_013265
hsa-miR-4677-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1187-1213
0.041
0
7mer
827-839
0.025
0
6mer
524-529
0.012
0
7mer
712-736
0.008
Not Conserved
CTD-2017D11.1
hsa-miR-4677-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1233-1243
0.079
1
6mer
760-776
0.007
1
AJ003147.8
hsa-miR-4677-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576762
Biotype: lincRNA
Gene id: ENSG00000262521
Gene Name: AJ003147.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
205-221
0.085
1
XLOC_011548
hsa-miR-4677-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023756
Biotype: transcript isomorph
Gene id: XLOC_011548
Gene Name: XLOC_011548
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
956-973
0.071
1
7mer
72-84
0.014
0
RP11-10K16.1
hsa-miR-4677-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500914
Biotype: antisense
Gene id: ENSG00000245213
Gene Name: RP11-10K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
196-209
0.063
2
8mer
67-83
0.022
1
XLOC_010752
hsa-miR-4677-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022420
Biotype: transcript isomorph
Gene id: XLOC_010752
Gene Name: XLOC_010752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1781-1791
0.076
1
6mer
368-376
0.005
1
6mer
1799-1821
0.004
0
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