LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
AC006548.28
hsa-miR-4677-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12828-12838
0.007
1
8mer
60490-60496
0.006
0
7mer
4451-4463
0.005
1
7mer
44553-44574
0.005
0
7mer
8356-8367
0.005
0
8mer
16099-16120
0.004
0
7mer
82251-82276
0.004
1
7mer
48089-48100
0.004
Not Conserved
8mer
52083-52096
0.003
Not Conserved
7mer
36915-36936
0.003
2
7mer
24872-24877
0.003
1
7mer
15112-15117
0.003
1
7mer
20506-20521
0.003
1
7mer
13900-13921
0.002
1
6mer
624-649
0.002
1
6mer
32795-32805
0.002
1
7mer
40502-40526
0.002
1
6mer
44365-44369
0.002
2
7mer
15803-15819
0.002
1
6mer
1107-1127
0.002
Not Conserved
6mer
14716-14720
0.002
4
7mer
6190-6196
0.002
1
6mer
35006-35018
0.002
1
6mer
43551-43573
0.002
1
6mer
68773-68777
0.002
0
6mer
17462-17474
0.002
1
6mer
34401-34421
0.002
2
6mer
37316-37337
0.002
3
6mer
19929-19948
0.001
0
6mer
10870-10884
0.001
0
6mer
50518-50522
0.001
Not Conserved
6mer
58266-58283
0.001
0
6mer
23782-23796
0.001
1
7mer
19879-19891
0.001
5
6mer
21356-21360
0.001
2
6mer
38083-38089
0.001
1
6mer
49167-49190
0.001
Not Conserved
6mer
62426-62436
0.001
0
6mer
22027-22051
0.001
0
6mer
40945-40963
0.001
0
6mer
2846-2870
0.001
0
6mer
6608-6629
0.001
1
6mer
83273-83296
0.001
0
6mer
62078-62104
0.001
1
6mer
60319-60346
0.001
1
6mer
39998-40013
0.001
Not Conserved
6mer
36136-36156
0.001
0
6mer
7046-7060
0.001
1
6mer
4139-4162
0.001
3
6mer
37130-37150
0.001
0
6mer
8501-8519
0.001
1
6mer
23605-23622
0.001
1
6mer
34897-34901
0.001
0
7mer
62063-62073
0.001
1
6mer
20429-20440
0.001
3
6mer
6061-6080
0.001
0
6mer
11642-11657
0.001
0
6mer
5349-5372
0.001
0
6mer
60649-60672
0.001
0
6mer
21231-21256
0.001
0
6mer
37124-37150
0.000
1
XLOC_013708
hsa-miR-4677-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1126-1132
0.057
0
8mer
720-738
0.036
0
6mer
1516-1521
0.016
0
6mer
650-655
0.009
0
AP001136.2
hsa-miR-4677-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000425058
Biotype: antisense
Gene id: ENSG00000226771
Gene Name: AP001136.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
54-65
0.096
1
7mer
480-503
0.017
1
6mer
569-592
0.005
0
RP11-1109M24.16
hsa-miR-4677-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578977
Biotype: lincRNA
Gene id: ENSG00000263609
Gene Name: RP11-1109M24.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
139-165
0.077
0
9mer
723-743
0.036
Not Conserved
RP4-760C5.5
hsa-miR-4677-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449316
Biotype: lincRNA
Gene id: ENSG00000226203
Gene Name: RP4-760C5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3863-3886
0.035
0
7mer
4448-4455
0.027
0
7mer
4280-4287
0.024
0
7mer
1281-1288
0.009
0
7mer
2815-2822
0.009
0
7mer
1784-1794
0.004
Not Conserved
7mer
2473-2479
0.002
Not Conserved
GCSAML-AS1
hsa-miR-4677-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420469
Biotype: antisense
Gene id: ENSG00000227135
Gene Name: GCSAML-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1604-1626
0.051
1
8mer
360-376
0.035
1
7mer
1304-1318
0.013
1
7mer
521-532
0.012
0
TSIX
hsa-miR-4677-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36329-36341
0.013
3
7mer
36820-36841
0.012
3
7mer
844-857
0.010
2
8mer
3906-3912
0.009
0
7mer
35860-35881
0.008
1
7mer
20828-20849
0.007
2
7mer
1288-1302
0.006
1
8mer
14251-14271
0.004
Not Conserved
7mer
9098-9118
0.004
0
7mer
2562-2568
0.004
0
7mer
2464-2470
0.003
1
7mer
17243-17265
0.003
1
6mer
30651-30668
0.003
4
6mer
35984-35988
0.002
4
6mer
7437-7441
0.002
0
6mer
35620-35637
0.002
3
6mer
26248-26253
0.002
1
6mer
33170-33196
0.002
0
6mer
2281-2306
0.002
2
6mer
16573-16597
0.002
0
6mer
35421-35446
0.002
1
7mer
15829-15849
0.002
Not Conserved
6mer
7127-7131
0.002
0
6mer
3040-3061
0.001
2
6mer
14636-14661
0.001
Not Conserved
6mer
31699-31717
0.001
1
6mer
33281-33307
0.001
3
6mer
25902-25929
0.001
0
6mer
20883-20909
0.001
1
XLOC_013502
hsa-miR-4677-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027863
Biotype: transcript isomorph
Gene id: XLOC_013502
Gene Name: XLOC_013502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3858-3881
0.034
0
7mer
4443-4450
0.027
0
7mer
4275-4282
0.024
0
7mer
1276-1283
0.009
0
7mer
2810-2817
0.009
0
7mer
1779-1789
0.004
Not Conserved
7mer
2468-2474
0.002
Not Conserved
RP11-431M3.2
hsa-miR-4677-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518178
Biotype: lincRNA
Gene id: ENSG00000254033
Gene Name: RP11-431M3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-371
0.104
3
8mer+mismatch
238-258
0.005
0
RP11-10J21.4
hsa-miR-4677-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517658
Biotype: antisense
Gene id: ENSG00000253307
Gene Name: RP11-10J21.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-393
0.018
1
7mer
150-162
0.015
1
7mer
114-141
0.013
1
7mer
258-285
0.013
1
7mer
330-357
0.012
0
7mer
294-321
0.012
1
7mer
222-249
0.012
1
7mer
186-213
0.012
1
KCNMA1-AS2
hsa-miR-4677-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428936
Biotype: antisense
Gene id: ENSG00000225497
Gene Name: KCNMA1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
327-334
0.102
4
6mer
140-167
0.006
2
AC004951.6
hsa-miR-4677-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1181-1187
0.098
0
6mer
1074-1082
0.008
0
RP11-15A1.9
hsa-miR-4677-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619673
Biotype: sense_intronic
Gene id: ENSG00000278492
Gene Name: RP11-15A1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
221-241
0.100
1
6mer
164-190
0.006
0
XLOC_006800
hsa-miR-4677-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014702
Biotype: transcript isomorph
Gene id: XLOC_006800
Gene Name: XLOC_006800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-356
0.064
2
7mer
432-437
0.042
2
TTN-AS1
hsa-miR-4677-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000582847
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
928-945
0.078
7
8mer
284-303
0.018
3
6mer
725-742
0.009
8
PAX8-AS1
hsa-miR-4677-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-51
0.050
Not Conserved
8mer
11259-11272
0.015
0
8mer
9801-9812
0.012
2
7mer
4798-4824
0.004
1
7mer
1746-1772
0.004
3
7mer
6725-6739
0.003
0
6mer
7327-7347
0.003
5
6mer
2806-2810
0.002
2
6mer
5838-5842
0.002
5
6mer
7131-7156
0.002
1
6mer
1162-1180
0.002
0
6mer
3796-3818
0.002
3
6mer
5471-5494
0.001
Not Conserved
6mer
9347-9364
0.001
2
6mer
4126-4136
0.001
2
6mer
2956-2983
0.001
0
AC079466.1
hsa-miR-4677-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3963-3974
0.071
1
7mer
4189-4194
0.019
0
6mer
970-982
0.008
1
6mer
3233-3237
0.006
1
RP3-323A16.1
hsa-miR-4677-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37984-37990
0.010
3
8mer
11266-11275
0.009
0
7mer
53721-53734
0.008
0
8mer
47255-47271
0.007
1
8mer
38687-38701
0.006
1
7mer
27778-27796
0.005
1
7mer
52553-52572
0.004
1
7mer
45186-45196
0.003
1
7mer
12536-12541
0.003
1
6mer
53541-53554
0.002
0
6mer
22366-22375
0.002
2
6mer
26596-26607
0.002
1
6mer
43828-43844
0.002
2
6mer
35883-35900
0.002
3
6mer
6902-6906
0.002
0
6mer
44091-44102
0.002
2
6mer
22946-22964
0.002
1
6mer
2711-2720
0.002
0
6mer
25689-25702
0.002
1
6mer
48847-48857
0.002
1
6mer
29030-29045
0.002
0
6mer
36295-36312
0.002
4
6mer
15918-15939
0.002
3
6mer
44677-44696
0.002
2
6mer
28230-28252
0.002
1
6mer
48555-48571
0.001
1
6mer
23153-23159
0.001
0
6mer
20296-20303
0.001
0
6mer
39456-39482
0.001
1
6mer
29247-29259
0.001
1
6mer
10415-10437
0.001
2
6mer
37654-37659
0.001
1
6mer
17201-17224
0.001
1
6mer
16059-16078
0.001
2
6mer
8237-8260
0.001
Not Conserved
6mer
25827-25840
0.001
1
6mer
16980-17001
0.001
1
6mer
5073-5098
0.001
0
7mer
10448-10462
0.001
0
6mer
5357-5378
0.001
0
6mer
16148-16161
0.001
3
6mer
24141-24158
0.001
1
6mer
16112-16126
0.001
1
RP11-227F8.2
hsa-miR-4677-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430905
Biotype: lincRNA
Gene id: ENSG00000227818
Gene Name: RP11-227F8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
265-276
0.101
4
CTA-796E4.5
hsa-miR-4677-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-487
0.023
1
7mer
816-826
0.015
4
7mer
26074-26079
0.005
2
8mer
4154-4163
0.005
1
7mer
10026-10051
0.004
1
7mer
11786-11796
0.004
1
7mer
20600-20614
0.004
1
7mer
30898-30921
0.003
0
7mer
18031-18037
0.003
0
7mer
5420-5434
0.003
1
6mer
1308-1329
0.002
4
6mer
1111-1116
0.002
1
6mer
30867-30884
0.002
0
6mer
24420-24441
0.002
2
6mer
10798-10823
0.002
1
6mer
30924-30951
0.002
2
6mer
23563-23578
0.002
4
6mer
19247-19257
0.002
1
6mer
4462-4466
0.002
1
6mer
12630-12640
0.002
1
6mer
21269-21282
0.002
3
6mer
25112-25127
0.002
2
6mer
8280-8297
0.002
2
6mer
1592-1616
0.001
3
6mer
5665-5670
0.001
1
6mer
25333-25346
0.001
0
6mer
13500-13515
0.001
1
6mer
8714-8738
0.001
2
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