LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
LINC01135
hsa-miR-4677-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_034015.1
Biotype: lincRNA
Gene id: NR_034015.1 (gene)
Gene Name: LINC01135
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
784-804
0.057
3
PAX8-AS1
hsa-miR-4677-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000333145
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-148
0.047
Not Conserved
7mer
1843-1869
0.009
3
6mer
1259-1277
0.002
0
TRAF3IP2-AS1
hsa-miR-4677-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000532353
Biotype: antisense
Gene id: ENSG00000231889
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-495
0.057
3
ARHGAP31-AS1
hsa-miR-4677-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466292
Biotype: antisense
Gene id: ENSG00000241155
Gene Name: ARHGAP31-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
140-157
0.052
3
6mer
341-349
0.005
3
XLOC_007690
hsa-miR-4677-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-239
0.031
1
6mer
347-370
0.010
1
7mer
1633-1645
0.009
0
6mer
2312-2327
0.008
1
RP11-384P7.7
hsa-miR-4677-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-573
0.030
1
6mer
112-129
0.007
1
6mer
63-75
0.007
1
6mer
282-303
0.004
1
6mer
3061-3084
0.004
1
6mer
2863-2883
0.002
1
6mer
2787-2804
0.002
0
CTD-2124B20.3
hsa-miR-4677-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582386
Biotype: sense_intronic
Gene id: ENSG00000265174
Gene Name: CTD-2124B20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-507
0.036
2
7mer
417-423
0.021
5
XLOC_003069
hsa-miR-4677-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006458
Biotype: transcript isomorph
Gene id: XLOC_003069
Gene Name: XLOC_003069
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2060-2078
0.036
0
8mer
181-206
0.015
1
6mer
2381-2393
0.005
1
LINC00692
hsa-miR-4677-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_034055.1
Biotype: lincRNA
Gene id: NR_034055.1 (gene)
Gene Name: LINC00692
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-577
0.050
0
6mer
880-892
0.006
1
AC093391.2
hsa-miR-4677-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110200.1
Biotype: antisense
Gene id: NR_110200.1 (gene)
Gene Name: AC093391.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
722-741
0.056
3
XIST
hsa-miR-4677-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1039-1057
0.030
5
8mer
3201-3213
0.010
2
7mer
17104-17113
0.004
1
6mer
5817-5841
0.003
2
6mer
5516-5520
0.002
2
6mer
15996-16009
0.002
1
6mer
16695-16716
0.002
3
6mer
9489-9505
0.002
0
6mer
17623-17638
0.001
2
RP1-309I22.2
hsa-miR-4677-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18508-18514
0.008
1
8mer
27060-27077
0.005
2
7mer
9838-9843
0.005
3
7mer
2768-2775
0.005
2
7mer
19434-19454
0.004
2
6mer
23713-23730
0.003
9
6mer
22659-22664
0.003
8
6mer
730-757
0.003
2
6mer
20518-20543
0.002
10
7mer
5419-5443
0.002
0
6mer
13730-13756
0.002
3
6mer
17439-17456
0.002
0
6mer
23099-23106
0.002
6
6mer
13314-13328
0.002
4
7mer
18268-18274
0.002
0
6mer
17848-17865
0.001
1
6mer
16008-16020
0.001
0
6mer
27495-27508
0.001
0
6mer
19516-19530
0.001
1
6mer
18508-18521
0.001
1
6mer
2790-2803
0.000
Not Conserved
XLOC_008207
hsa-miR-4677-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017361
Biotype: transcript isomorph
Gene id: XLOC_008207
Gene Name: XLOC_008207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-183
0.024
7
8mer
3431-3453
0.014
1
6mer
451-475
0.006
6
6mer
538-558
0.005
7
7mer
3411-3431
0.003
2
6mer
1214-1239
0.003
5
6mer
1317-1336
0.001
2
RP11-553L6.2
hsa-miR-4677-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481773
Biotype: antisense
Gene id: ENSG00000241490
Gene Name: RP11-553L6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
289-296
0.045
1
7mer
343-358
0.007
3
6mer
605-623
0.004
1
CPEB2-AS1
hsa-miR-4677-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500394
Biotype: lincRNA
Gene id: ENSG00000247624
Gene Name: CPEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-88
0.055
1
LINC00692
hsa-miR-4677-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451284
Biotype: lincRNA
Gene id: ENSG00000230891
Gene Name: LINC00692
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-576
0.050
0
6mer
879-891
0.005
1
XLOC_012728
hsa-miR-4677-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026218
Biotype: transcript isomorph
Gene id: XLOC_012728
Gene Name: XLOC_012728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4509-4517
0.019
1
7mer
59-77
0.011
2
8mer
1570-1587
0.008
1
6mer
752-778
0.003
1
6mer
4178-4195
0.003
0
6mer
525-547
0.003
1
6mer
2867-2871
0.003
3
7mer
1617-1634
0.002
1
6mer
3132-3142
0.002
1
6mer
3645-3662
0.001
1
XLOC_012031
hsa-miR-4677-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025076
Biotype: transcript isomorph
Gene id: XLOC_012031
Gene Name: XLOC_012031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1249-1253
0.004
1
6mer
755-759
0.003
1
6mer
845-849
0.002
1
6mer
905-909
0.002
1
6mer
943-947
0.002
1
6mer
769-773
0.002
0
6mer
815-819
0.002
1
6mer
1009-1013
0.002
1
6mer
1057-1061
0.002
1
6mer
891-895
0.002
0
6mer
995-999
0.002
1
6mer
871-875
0.002
0
6mer
1145-1149
0.002
1
6mer
801-805
0.002
0
6mer
831-835
0.002
0
6mer
1115-1119
0.002
1
6mer
1131-1135
0.002
1
6mer
977-996
0.002
0
6mer
857-861
0.001
0
6mer
929-933
0.001
0
6mer
1163-1168
0.001
0
6mer
1203-1207
0.001
0
6mer
1197-1201
0.001
0
6mer
1217-1221
0.001
0
6mer
1091-1095
0.001
0
6mer
1077-1081
0.001
0
6mer
1121-1125
0.001
0
6mer
1231-1235
0.001
Not Conserved
6mer
963-967
0.001
Not Conserved
6mer
1175-1179
0.001
Not Conserved
6mer
1033-1037
0.001
Not Conserved
6mer
1027-1031
0.001
Not Conserved
6mer
1043-1047
0.001
Not Conserved
CTD-2256P15.5
hsa-miR-4677-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607847
Biotype: lincRNA
Gene id: ENSG00000271715
Gene Name: CTD-2256P15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-273
0.031
0
8mer
185-208
0.024
1
ZNF571-AS1
hsa-miR-4677-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586139
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2457-2463
0.031
2
7mer
376-394
0.012
1
7mer
1555-1562
0.007
0
7mer
2109-2123
0.004
1
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