LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
CTD-3018O17.3
hsa-miR-455-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601562
Biotype: lincRNA
Gene id: ENSG00000269834
Gene Name: CTD-3018O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
398-412
0.015
1
7mer
239-261
0.014
0
6mer
197-222
0.005
0
RP3-410C9.2
hsa-miR-455-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000416638
Biotype: lincRNA
Gene id: ENSG00000238129
Gene Name: RP3-410C9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-107
0.035
0
RP11-145M4.1
hsa-miR-455-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422198
Biotype: lincRNA
Gene id: ENSG00000241042
Gene Name: RP11-145M4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-103
0.035
1
RP11-238K6.1
hsa-miR-455-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518973
Biotype: lincRNA
Gene id: ENSG00000253288
Gene Name: RP11-238K6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3694-3714
0.019
0
7mer
2776-2787
0.007
0
6mer
563-573
0.004
1
6mer
3576-3599
0.003
1
6mer
1201-1215
0.002
0
MAPT-AS1
hsa-miR-455-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579599
Biotype: antisense
Gene id: ENSG00000264589
Gene Name: MAPT-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-162
0.034
0
XLOC_013984
hsa-miR-455-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029063
Biotype: transcript isomorph
Gene id: XLOC_013984
Gene Name: XLOC_013984
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
311-334
0.034
1
AC007131.2
hsa-miR-455-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000434611
Biotype: lincRNA
Gene id: ENSG00000233891
Gene Name: AC007131.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-95
0.034
9
RP11-787I22.3
hsa-miR-455-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605885
Biotype: antisense
Gene id: ENSG00000271730
Gene Name: RP11-787I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-163
0.034
8
LINC00690
hsa-miR-455-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000429949
Biotype: lincRNA
Gene id: ENSG00000233570
Gene Name: LINC00690
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-352
0.034
2
LINC00635
hsa-miR-455-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608306
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-579
0.034
1
CASC2
hsa-miR-455-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000426021
Biotype: antisense
Gene id: ENSG00000177640
Gene Name: CASC2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2632-2656
0.033
0
6mer
2324-2343
0.002
0
LINC01102
hsa-miR-455-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429464
Biotype: lincRNA
Gene id: ENSG00000235597
Gene Name: LINC01102
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-126
0.034
12
SIRPG-AS1
hsa-miR-455-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000437384
Biotype: antisense
Gene id: ENSG00000237914
Gene Name: SIRPG-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-231
0.034
Not Conserved
RP11-733O18.1
hsa-miR-455-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000422914
Biotype: lincRNA
Gene id: ENSG00000236120
Gene Name: RP11-733O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-356
0.027
1
6mer
591-616
0.007
1
SOX2-OT
hsa-miR-455-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493116
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-447
0.030
0
6mer
500-508
0.004
1
AC004510.3
hsa-miR-455-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589310
Biotype: lincRNA
Gene id: ENSG00000267308
Gene Name: AC004510.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-263
0.025
1
7mer
217-232
0.009
0
XLOC_001602
hsa-miR-455-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002650
Biotype: transcript isomorph
Gene id: XLOC_001602
Gene Name: XLOC_001602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-189
0.034
12
RP11-227G15.11
hsa-miR-455-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000618199
Biotype: lincRNA
Gene id: ENSG00000278668
Gene Name: RP11-227G15.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-378
0.028
0
6mer
271-298
0.006
1
FLJ31662
hsa-miR-455-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424943
Biotype: lincRNA
Gene id: ENSG00000233907
Gene Name: FLJ31662
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-58
0.012
1
7mer
2299-2321
0.012
1
7mer
141-150
0.010
1
XLOC_004323
hsa-miR-455-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009910
Biotype: transcript isomorph
Gene id: XLOC_004323
Gene Name: XLOC_004323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2898-2914
0.014
1
8mer
4684-4711
0.011
0
8mer
2919-2932
0.004
0
7mer
1994-2014
0.002
0
6mer
2350-2372
0.002
1
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