LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
XLOC_005821
hsa-miR-455-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012265
Biotype: transcript isomorph
Gene id: XLOC_005821
Gene Name: XLOC_005821
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-248
0.029
6
6mer
740-763
0.007
6
MAPT-AS1
hsa-miR-455-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579244
Biotype: antisense
Gene id: ENSG00000264589
Gene Name: MAPT-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-385
0.036
0
LINC01478
hsa-miR-455-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587877
Biotype: lincRNA
Gene id: ENSG00000267337
Gene Name: LINC01478
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1941-1955
0.027
Not Conserved
7mer
249-271
0.009
0
RP11-307P5.2
hsa-miR-455-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448909
Biotype: lincRNA
Gene id: ENSG00000226249
Gene Name: RP11-307P5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-507
0.036
0
LA16c-306A4.1
hsa-miR-455-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569106
Biotype: antisense
Gene id: ENSG00000260022
Gene Name: LA16c-306A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
474-497
0.036
1
XLOC_004806
hsa-miR-455-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010324
Biotype: transcript isomorph
Gene id: XLOC_004806
Gene Name: XLOC_004806
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
706-722
0.035
4
RP11-517I3.1
hsa-miR-455-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512779
Biotype: antisense
Gene id: ENSG00000250602
Gene Name: RP11-517I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
387-397
0.035
0
AC090505.6
hsa-miR-455-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423318
Biotype: lincRNA
Gene id: ENSG00000237222
Gene Name: AC090505.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3167-3187
0.020
Not Conserved
8mer
2699-2721
0.013
0
6mer
2917-2936
0.002
1
XLOC_009448
hsa-miR-455-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020069
Biotype: transcript isomorph
Gene id: XLOC_009448
Gene Name: XLOC_009448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-665
0.035
2
CATIP-AS1
hsa-miR-455-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441749
Biotype: antisense
Gene id: ENSG00000225062
Gene Name: CATIP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-187
0.035
1
CTC-436K13.6
hsa-miR-455-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523178
Biotype: lincRNA
Gene id: ENSG00000253449
Gene Name: CTC-436K13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-18
0.035
2
ARRDC1-AS1
hsa-miR-455-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000496793
Biotype: antisense
Gene id: ENSG00000203993
Gene Name: ARRDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-561
0.026
0
7mer
502-528
0.006
0
7mer
945-952
0.003
0
SZT2-AS1
hsa-miR-455-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000396885
Biotype: antisense
Gene id: ENSG00000229372
Gene Name: SZT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
499-526
0.035
6
XLOC_013743
hsa-miR-455-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028388
Biotype: transcript isomorph
Gene id: XLOC_013743
Gene Name: XLOC_013743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-385
0.035
Not Conserved
XLOC_004122
hsa-miR-455-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008622
Biotype: transcript isomorph
Gene id: XLOC_004122
Gene Name: XLOC_004122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
275-298
0.035
1
RP11-710C12.1
hsa-miR-455-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605849
Biotype: antisense
Gene id: ENSG00000271474
Gene Name: RP11-710C12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-83
0.025
5
6mer
653-662
0.005
6
6mer
795-809
0.005
4
PTPRG-AS1
hsa-miR-455-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469148
Biotype: antisense
Gene id: ENSG00000241472
Gene Name: PTPRG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-222
0.031
2
6mer
163-180
0.004
2
LINC01102
hsa-miR-455-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447380
Biotype: lincRNA
Gene id: ENSG00000235597
Gene Name: LINC01102
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-110
0.035
12
RP1-90G24.8
hsa-miR-455-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426354
Biotype: lincRNA
Gene id: ENSG00000230120
Gene Name: RP1-90G24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-72
0.035
1
CATIP-AS1
hsa-miR-455-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425481
Biotype: retained_intron
Gene id: ENSG00000225062
Gene Name: CATIP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-186
0.035
1
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