LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
AC005220.3
hsa-miR-455-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000450473
Biotype: antisense
Gene id: ENSG00000236352
Gene Name: AC005220.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-253
0.021
1
9mer
622-634
0.016
0
RP11-1084I9.2
hsa-miR-455-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557426
Biotype: lincRNA
Gene id: ENSG00000258931
Gene Name: RP11-1084I9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-106
0.031
1
6mer
411-426
0.006
1
MIR6818
hsa-miR-455-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46161-46175
0.007
1
8mer
16273-16290
0.007
3
7mer
48459-48475
0.004
2
7mer
15293-15318
0.003
2
7mer
47957-47973
0.002
0
7mer
42964-42985
0.002
1
6mer
8120-8132
0.002
3
6mer
27403-27417
0.002
0
6mer
30285-30311
0.002
1
6mer
6578-6588
0.002
1
6mer
47403-47420
0.001
2
6mer
7793-7809
0.001
1
6mer
32201-32212
0.001
0
6mer
40381-40390
0.001
0
AC023115.2
hsa-miR-455-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450294
Biotype: lincRNA
Gene id: ENSG00000235885
Gene Name: AC023115.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
693-702
0.037
2
RP11-182L21.5
hsa-miR-455-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000606384
Biotype: sense_intronic
Gene id: ENSG00000272489
Gene Name: RP11-182L21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
948-956
0.037
0
XLOC_006867
hsa-miR-455-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014791
Biotype: transcript isomorph
Gene id: XLOC_006867
Gene Name: XLOC_006867
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-136
0.021
0
8mer
1078-1099
0.015
1
KB-1980E6.3
hsa-miR-455-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519630
Biotype: lincRNA
Gene id: ENSG00000253633
Gene Name: KB-1980E6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-115
0.033
1
7mer
307-329
0.003
1
LINC01197
hsa-miR-455-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000614853
Biotype: lincRNA
Gene id: ENSG00000248441
Gene Name: LINC01197
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1507-1522
0.034
2
6mer
792-817
0.002
0
RP11-888D10.4
hsa-miR-455-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609701
Biotype: sense_intronic
Gene id: ENSG00000273284
Gene Name: RP11-888D10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-669
0.036
3
LINC00635
hsa-miR-455-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601930
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-448
0.036
1
RP11-138P22.1
hsa-miR-455-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581901
Biotype: antisense
Gene id: ENSG00000266527
Gene Name: RP11-138P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-80
0.036
0
GS1-278J22.2
hsa-miR-455-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412800
Biotype: lincRNA
Gene id: ENSG00000228627
Gene Name: GS1-278J22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-377
0.036
0
PP14571
hsa-miR-455-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000471662
Biotype: retained_intron
Gene id: ENSG00000218416
Gene Name: PP14571
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-305
0.027
0
8mer
1356-1371
0.009
0
KB-431C1.4
hsa-miR-455-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499653
Biotype: antisense
Gene id: ENSG00000246263
Gene Name: KB-431C1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1893-1907
0.036
6
RP11-340I6.8
hsa-miR-455-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450544
Biotype: lincRNA
Gene id: ENSG00000226581
Gene Name: RP11-340I6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-92
0.036
0
XLOC_013571
hsa-miR-455-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027955
Biotype: transcript isomorph
Gene id: XLOC_013571
Gene Name: XLOC_013571
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-253
0.021
1
9mer
702-714
0.015
0
LINC00960
hsa-miR-455-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463183
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
831-847
0.032
1
6mer
637-650
0.004
0
XLOC_010592
hsa-miR-455-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021992
Biotype: transcript isomorph
Gene id: XLOC_010592
Gene Name: XLOC_010592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-362
0.028
1
6mer
5312-5322
0.002
Not Conserved
6mer
4746-4765
0.002
Not Conserved
6mer
2284-2300
0.001
Not Conserved
6mer
4508-4524
0.001
Not Conserved
6mer
4271-4285
0.001
Not Conserved
6mer
3605-3615
0.001
Not Conserved
RP11-94C24.6
hsa-miR-455-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000502300
Biotype: lincRNA
Gene id: ENSG00000249451
Gene Name: RP11-94C24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-303
0.036
3
AC007740.1
hsa-miR-455-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446838
Biotype: antisense
Gene id: ENSG00000237750
Gene Name: AC007740.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2493-2508
0.031
1
6mer
2508-2527
0.003
1
6mer
1354-1373
0.002
1
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