LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
XLOC_007528
hsa-miR-455-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016134
Biotype: transcript isomorph
Gene id: XLOC_007528
Gene Name: XLOC_007528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4171-4187
0.021
1
7mer
5570-5583
0.018
1
XLOC_003595
hsa-miR-455-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008143
Biotype: transcript isomorph
Gene id: XLOC_003595
Gene Name: XLOC_003595
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-29
0.039
2
XLOC_000651
hsa-miR-455-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001364
Biotype: transcript isomorph
Gene id: XLOC_000651
Gene Name: XLOC_000651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-390
0.039
0
RP11-281P23.2
hsa-miR-455-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509244
Biotype: lincRNA
Gene id: ENSG00000249631
Gene Name: RP11-281P23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-425
0.030
0
6mer
40-62
0.005
1
6mer
131-145
0.004
0
RP11-398K22.12
hsa-miR-455-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421315
Biotype: antisense
Gene id: ENSG00000229852
Gene Name: RP11-398K22.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3090-3101
0.034
2
6mer
163-172
0.002
Not Conserved
7mer
1352-1365
0.001
Not Conserved
7mer
1009-1019
0.001
Not Conserved
XLOC_000218
hsa-miR-455-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000960
Biotype: transcript isomorph
Gene id: XLOC_000218
Gene Name: XLOC_000218
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-68
0.039
2
AP001432.14
hsa-miR-455-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000440629
Biotype: lincRNA
Gene id: ENSG00000242553
Gene Name: AP001432.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-139
0.038
1
LINC00635
hsa-miR-455-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473528
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-259
0.038
1
LINC00635
hsa-miR-455-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609429
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-259
0.038
1
MAPT-AS1
hsa-miR-455-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581125
Biotype: antisense
Gene id: ENSG00000264589
Gene Name: MAPT-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-50
0.038
0
RP11-141M1.3
hsa-miR-455-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437698
Biotype: lincRNA
Gene id: ENSG00000230490
Gene Name: RP11-141M1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-25
0.038
1
RP11-459F1.2
hsa-miR-455-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456477
Biotype: lincRNA
Gene id: ENSG00000231297
Gene Name: RP11-459F1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
699-714
0.038
1
LINC01359
hsa-miR-455-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447748
Biotype: lincRNA
Gene id: ENSG00000226891
Gene Name: LINC01359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-237
0.033
0
6mer
260-277
0.005
Not Conserved
RP11-582E3.2
hsa-miR-455-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538920
Biotype: lincRNA
Gene id: ENSG00000256226
Gene Name: RP11-582E3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
73-94
0.031
0
6mer
277-284
0.006
1
XLOC_006793
hsa-miR-455-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014696
Biotype: transcript isomorph
Gene id: XLOC_006793
Gene Name: XLOC_006793
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-169
0.032
1
6mer
620-631
0.006
1
RP13-212L9.1
hsa-miR-455-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000418369
Biotype: lincRNA
Gene id: ENSG00000206062
Gene Name: RP13-212L9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-63
0.037
1
XLOC_000160
hsa-miR-455-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000918
Biotype: transcript isomorph
Gene id: XLOC_000160
Gene Name: XLOC_000160
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-73
0.037
2
MIR4534
hsa-miR-455-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8792-8814
0.004
0
7mer
29929-29953
0.003
0
6mer
25780-25797
0.003
9
7mer
9785-9800
0.003
0
8mer
3087-3100
0.002
1
6mer
19732-19744
0.002
9
7mer
4370-4380
0.002
1
7mer
39438-39462
0.002
0
7mer
34883-34902
0.002
1
7mer
27969-27984
0.002
1
7mer
48130-48154
0.002
1
7mer
41365-41381
0.002
1
6mer
22280-22296
0.002
0
6mer
4679-4692
0.001
Not Conserved
6mer
34039-34059
0.001
0
6mer
17949-17961
0.001
1
6mer
5551-5565
0.001
1
6mer
24452-24468
0.001
1
6mer
39617-39629
0.001
1
6mer
22676-22686
0.001
1
6mer
28065-28088
0.001
1
6mer
17982-17991
0.001
1
RP11-474B12.1
hsa-miR-455-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564739
Biotype: antisense
Gene id: ENSG00000261369
Gene Name: RP11-474B12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-337
0.037
1
LINC00571
hsa-miR-455-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000434565
Biotype: lincRNA
Gene id: ENSG00000223685
Gene Name: LINC00571
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
212-222
0.020
1
7mer
426-445
0.017
1
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