LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
RP11-932O9.4
hsa-miR-455-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563502
Biotype: lincRNA
Gene id: ENSG00000259906
Gene Name: RP11-932O9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-63
0.039
3
7mer
92-110
0.004
0
LINC00458
hsa-miR-455-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000423442
Biotype: lincRNA
Gene id: ENSG00000234787
Gene Name: LINC00458
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-22
0.023
1
7mer
719-728
0.020
2
RP4-665J23.2
hsa-miR-455-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425185
Biotype: lincRNA
Gene id: ENSG00000225446
Gene Name: RP4-665J23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-149
0.043
10
MEG9
hsa-miR-455-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000429368
Biotype: lincRNA
Gene id: ENSG00000223403
Gene Name: MEG9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1654-1680
0.037
8
6mer
490-510
0.002
1
6mer
661-669
0.002
1
6mer
721-738
0.001
1
VAC14-AS1
hsa-miR-455-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000398177
Biotype: antisense
Gene id: ENSG00000214353
Gene Name: VAC14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1932-1950
0.021
0
7mer
165-177
0.007
1
7mer
286-298
0.007
0
7mer
61-87
0.005
1
6mer
1950-1967
0.002
0
RP11-1017G21.4
hsa-miR-455-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557551
Biotype: antisense
Gene id: ENSG00000258959
Gene Name: RP11-1017G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-511
0.042
10
RP11-86A5.1
hsa-miR-455-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000423914
Biotype: lincRNA
Gene id: ENSG00000233403
Gene Name: RP11-86A5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-140
0.042
1
PAX8-AS1
hsa-miR-455-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623031
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-389
0.042
5
RP11-24H2.3
hsa-miR-455-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000625090
Biotype: lincRNA
Gene id: ENSG00000279325
Gene Name: RP11-24H2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-93
0.029
1
7mer
219-232
0.013
3
XLOC_006122
hsa-miR-455-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-550
0.041
0
CTD-2006K23.2
hsa-miR-455-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582959
Biotype: antisense
Gene id: ENSG00000264659
Gene Name: CTD-2006K23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-247
0.021
1
9mer
18-29
0.020
0
RP11-320G24.1
hsa-miR-455-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000452690
Biotype: lincRNA
Gene id: ENSG00000236393
Gene Name: RP11-320G24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2929-2950
0.023
0
7mer
131-156
0.007
2
6mer
515-535
0.005
5
7mer
1781-1797
0.004
1
6mer
767-781
0.002
1
RP11-508O18.1
hsa-miR-455-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494761
Biotype: lincRNA
Gene id: ENSG00000239454
Gene Name: RP11-508O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1005-1013
0.033
0
7mer
1299-1307
0.007
1
RP11-15B24.5
hsa-miR-455-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585998
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
665-681
0.032
0
7mer
6-28
0.008
1
XLOC_005212
hsa-miR-455-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011164
Biotype: transcript isomorph
Gene id: XLOC_005212
Gene Name: XLOC_005212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2583-2591
0.040
1
RP11-746B8.1
hsa-miR-455-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579160
Biotype: antisense
Gene id: ENSG00000263765
Gene Name: RP11-746B8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-36
0.040
0
AP002856.4
hsa-miR-455-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000441665
Biotype: lincRNA
Gene id: ENSG00000236129
Gene Name: AP002856.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-457
0.040
0
LINC00635
hsa-miR-455-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608307
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-259
0.040
1
DSCR9
hsa-miR-455-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000454482
Biotype: lincRNA
Gene id: ENSG00000230366
Gene Name: DSCR9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1447-1465
0.032
1
6mer
340-358
0.004
1
6mer
430-438
0.003
0
PPP1R26-AS1
hsa-miR-455-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603624
Biotype: antisense
Gene id: ENSG00000225361
Gene Name: PPP1R26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-133
0.033
1
8mer
1667-1679
0.006
0
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