LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
RP1-205F14P.1
hsa-miR-455-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625043
Biotype: lincRNA
Gene id: ENSG00000280445
Gene Name: RP1-205F14P.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-145
0.045
6
RP11-746B8.1
hsa-miR-455-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583612
Biotype: antisense
Gene id: ENSG00000263765
Gene Name: RP11-746B8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-350
0.042
0
7mer
35-45
0.003
0
MBNL1-AS1
hsa-miR-455-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608395
Biotype: antisense
Gene id: ENSG00000229619
Gene Name: MBNL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-357
0.032
1
6mer
5920-5939
0.004
3
6mer
1027-1040
0.003
0
6mer
5726-5738
0.002
2
6mer
1419-1443
0.002
2
7mer
1341-1353
0.002
0
CYP4F35P
hsa-miR-455-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582957
Biotype: lincRNA
Gene id: ENSG00000265787
Gene Name: CYP4F35P
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-383
0.041
0
6mer
1039-1051
0.003
0
XLOC_009320
hsa-miR-455-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019525
Biotype: transcript isomorph
Gene id: XLOC_009320
Gene Name: XLOC_009320
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-406
0.027
0
7mer
485-503
0.012
0
8mer+mismatch
485-494
0.005
1
XLOC_003337
hsa-miR-455-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005477
Biotype: transcript isomorph
Gene id: XLOC_003337
Gene Name: XLOC_003337
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-181
0.044
2
RP11-403A3.1
hsa-miR-455-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618896
Biotype: lincRNA
Gene id: ENSG00000274331
Gene Name: RP11-403A3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1399-1424
0.044
4
CTD-2313F11.1
hsa-miR-455-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000608975
Biotype: retained_intron
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-103
0.025
1
7mer
451-474
0.020
3
RP11-360P21.2
hsa-miR-455-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000435560
Biotype: lincRNA
Gene id: ENSG00000229102
Gene Name: RP11-360P21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-186
0.044
2
CTD-3049M7.1
hsa-miR-455-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554261
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-59
0.036
1
6mer
71-92
0.008
1
RP5-968P14.2
hsa-miR-455-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569378
Biotype: antisense
Gene id: ENSG00000260063
Gene Name: RP5-968P14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1086-1098
0.041
7
6mer
984-996
0.003
7
VAC14-AS1
hsa-miR-455-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562507
Biotype: antisense
Gene id: ENSG00000214353
Gene Name: VAC14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4631-4649
0.021
0
7mer
200-212
0.007
1
7mer
321-333
0.006
0
7mer
96-122
0.005
1
6mer
4649-4666
0.002
0
7mer
778-802
0.002
0
6mer
2865-2880
0.001
1
CTD-2503O16.4
hsa-miR-455-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505200
Biotype: lincRNA
Gene id: ENSG00000249856
Gene Name: CTD-2503O16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-164
0.039
1
6mer
89-106
0.004
0
RP11-50D16.4
hsa-miR-455-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618106
Biotype: lincRNA
Gene id: ENSG00000273507
Gene Name: RP11-50D16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-72
0.040
0
6mer
191-198
0.003
Not Conserved
RP11-344E13.3
hsa-miR-455-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000443508
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-73
0.038
0
6mer
496-516
0.005
1
RNF219-AS1
hsa-miR-455-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000560584
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1971-1990
0.042
11
6mer
396-410
0.002
1
XLOC_012139
hsa-miR-455-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025161
Biotype: transcript isomorph
Gene id: XLOC_012139
Gene Name: XLOC_012139
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-93
0.037
0
6mer
516-536
0.006
1
RP11-644F5.11
hsa-miR-455-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552576
Biotype: antisense
Gene id: ENSG00000258056
Gene Name: RP11-644F5.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1347-1358
0.043
3
RNF219-AS1
hsa-miR-455-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606429
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2167-2186
0.042
11
6mer
592-606
0.002
1
XLOC_004699
hsa-miR-455-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010231
Biotype: transcript isomorph
Gene id: XLOC_004699
Gene Name: XLOC_004699
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-546
0.043
1
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