LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
RP11-115J16.1
hsa-miR-455-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520390
Biotype: lincRNA
Gene id: ENSG00000254235
Gene Name: RP11-115J16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3134-3145
0.038
1
7mer
1104-1130
0.006
1
6mer
650-657
0.003
1
6mer
1313-1332
0.002
1
RP11-526A4.1
hsa-miR-455-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502345
Biotype: lincRNA
Gene id: ENSG00000234828
Gene Name: RP11-526A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-302
0.049
3
RP11-691H4.3
hsa-miR-455-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588204
Biotype: antisense
Gene id: ENSG00000267393
Gene Name: RP11-691H4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-168
0.041
1
6mer
337-360
0.005
1
6mer
282-289
0.003
Not Conserved
RP11-717I24.1
hsa-miR-455-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568289
Biotype: lincRNA
Gene id: ENSG00000260642
Gene Name: RP11-717I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-209
0.039
3
7mer
142-160
0.010
2
MUC19
hsa-miR-455-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24027-24035
0.022
6
7mer
24290-24303
0.004
3
6mer
24460-24473
0.004
0
6mer
3586-3600
0.003
7
7mer
3164-3183
0.002
1
7mer
17856-17875
0.002
0
6mer
4473-4488
0.002
3
7mer
10043-10062
0.002
0
7mer
10673-10692
0.002
Not Conserved
6mer
21647-21661
0.002
1
7mer
13479-13498
0.001
Not Conserved
6mer
20676-20689
0.001
0
7mer
10163-10182
0.001
Not Conserved
6mer
7439-7458
0.001
0
XLOC_001892
hsa-miR-455-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004050
Biotype: transcript isomorph
Gene id: XLOC_001892
Gene Name: XLOC_001892
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-134
0.048
0
LINC01250
hsa-miR-455-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457478
Biotype: lincRNA
Gene id: ENSG00000234423
Gene Name: LINC01250
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
276-283
0.042
1
6mer
1808-1821
0.004
0
6mer
904-922
0.002
Not Conserved
XLOC_010804
hsa-miR-455-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022476
Biotype: transcript isomorph
Gene id: XLOC_010804
Gene Name: XLOC_010804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Liver Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
102-128
0.048
2
LINC00635
hsa-miR-455-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475362
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-389
0.048
1
CTD-2269F5.1
hsa-miR-455-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502253
Biotype: antisense
Gene id: ENSG00000250320
Gene Name: CTD-2269F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-193
0.048
1
AC006042.6
hsa-miR-455-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449931
Biotype: antisense
Gene id: ENSG00000227719
Gene Name: AC006042.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-229
0.047
4
RP11-372K14.2
hsa-miR-455-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000603472
Biotype: antisense
Gene id: ENSG00000270681
Gene Name: RP11-372K14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1056-1066
0.047
1
RP11-744K17.1
hsa-miR-455-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4656-4681
0.047
0
RP11-50D16.4
hsa-miR-455-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000614005
Biotype: lincRNA
Gene id: ENSG00000273507
Gene Name: RP11-50D16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-72
0.044
0
6mer
191-198
0.003
Not Conserved
MESTIT1
hsa-miR-455-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_004382.1
Biotype: antisense
Gene id: NR_004382.1 (gene)
Gene Name: MESTIT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2863-2874
0.042
4
7mer
2266-2287
0.002
0
7mer
1979-1987
0.002
0
LOC100996249
hsa-miR-455-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110159.1
Biotype: lincRNA
Gene id: NR_110159.1 (gene)
Gene Name: LOC100996249
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-471
0.047
1
RP11-146N18.1
hsa-miR-455-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589376
Biotype: lincRNA
Gene id: ENSG00000267134
Gene Name: RP11-146N18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
735-758
0.044
0
6mer
898-918
0.002
1
RP11-169K17.4
hsa-miR-455-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607849
Biotype: antisense
Gene id: ENSG00000271716
Gene Name: RP11-169K17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
507-528
0.040
1
7mer
420-443
0.003
0
7mer
399-410
0.003
Not Conserved
XLOC_009272
hsa-miR-455-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019459
Biotype: transcript isomorph
Gene id: XLOC_009272
Gene Name: XLOC_009272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-421
0.037
0
6mer
1079-1089
0.008
4
LOC100996249
hsa-miR-455-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110160.1
Biotype: lincRNA
Gene id: NR_110160.1 (gene)
Gene Name: LOC100996249
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-253
0.046
1
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