LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
PCBP2-OT1
hsa-miR-455-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_109828.1
Biotype: sense
Gene id: NR_109828.1 (gene)
Gene Name: PCBP2-OT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-518
0.041
8
6mer
429-444
0.018
9
RP11-344E13.3
hsa-miR-455-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584433
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-149
0.058
0
RP11-32B5.8
hsa-miR-455-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000594169
Biotype: lincRNA
Gene id: ENSG00000268531
Gene Name: RP11-32B5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1819-1834
0.016
1
7mer
146-157
0.012
1
7mer
251-260
0.009
1
7mer
1941-1952
0.008
1
7mer
866-883
0.005
0
8mer
1598-1610
0.003
Not Conserved
8mer
1639-1649
0.002
Not Conserved
8mer
898-922
0.002
Not Conserved
PWRN1
hsa-miR-455-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569908
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
426-453
0.058
1
BZRAP1-AS1
hsa-miR-455-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580022
Biotype: antisense
Gene id: ENSG00000265148
Gene Name: BZRAP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1952-1971
0.049
1
6mer
190-213
0.005
1
7mer
212-227
0.004
2
LOC100131289
hsa-miR-455-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038929.1
Biotype: lincRNA
Gene id: NR_038929.1 (gene)
Gene Name: LOC100131289
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-202
0.034
1
6mer
166-182
0.011
1
7mer
196-211
0.007
0
6mer
355-364
0.004
1
AC023115.2
hsa-miR-455-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452716
Biotype: lincRNA
Gene id: ENSG00000235885
Gene Name: AC023115.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
812-821
0.032
2
7mer
962-984
0.015
2
7mer
419-429
0.006
3
RP11-258F22.2
hsa-miR-455-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564417
Biotype: lincRNA
Gene id: ENSG00000260137
Gene Name: RP11-258F22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-282
0.053
0
XLOC_007303
hsa-miR-455-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015932
Biotype: transcript isomorph
Gene id: XLOC_007303
Gene Name: XLOC_007303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-408
0.040
3
7mer
27-47
0.013
1
BZRAP1-AS1
hsa-miR-455-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578025
Biotype: antisense
Gene id: ENSG00000265148
Gene Name: BZRAP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1844-1863
0.045
1
6mer
146-169
0.005
1
7mer
168-183
0.003
2
AC079466.1
hsa-miR-455-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1488-1503
0.020
1
7mer
2632-2641
0.011
1
6mer
3152-3167
0.009
1
6mer
2231-2235
0.006
1
6mer
2003-2017
0.005
1
RP11-435O5.2
hsa-miR-455-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000433644
Biotype: lincRNA
Gene id: ENSG00000237857
Gene Name: RP11-435O5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-100
0.052
1
RP11-586K2.1
hsa-miR-455-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521936
Biotype: antisense
Gene id: ENSG00000253553
Gene Name: RP11-586K2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1389-1404
0.048
0
6mer
624-647
0.004
0
XLOC_006471
hsa-miR-455-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014314
Biotype: transcript isomorph
Gene id: XLOC_006471
Gene Name: XLOC_006471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-259
0.052
1
RP11-99J16__A.2
hsa-miR-455-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428480
Biotype: antisense
Gene id: ENSG00000244137
Gene Name: RP11-99J16__A.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-312
0.046
1
7mer
538-559
0.006
1
RP11-99J16__A.2
hsa-miR-455-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452640
Biotype: antisense
Gene id: ENSG00000244137
Gene Name: RP11-99J16__A.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-332
0.044
1
7mer
558-579
0.005
1
6mer
699-709
0.003
0
LINC01021
hsa-miR-455-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512067
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1084
0.031
1
8mer
1089-1102
0.016
0
6mer
520-542
0.004
1
LOC100129034
hsa-miR-455-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027406.1
Biotype: antisense
Gene id: NR_027406.1 (gene)
Gene Name: LOC100129034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-150
0.020
3
7mer
5395-5405
0.009
0
7mer
181-202
0.008
2
7mer
329-344
0.007
1
8mer
1466-1479
0.004
1
6mer
5520-5537
0.003
1
U91328.22
hsa-miR-455-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000608919
Biotype: lincRNA
Gene id: ENSG00000272810
Gene Name: U91328.22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
369-385
0.050
0
RP1-205F14P.1
hsa-miR-455-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623572
Biotype: lincRNA
Gene id: ENSG00000280445
Gene Name: RP1-205F14P.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-114
0.050
6
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