LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
LINC00960
hsa-miR-455-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1598-1614
0.029
1
6mer
1404-1417
0.004
0
AC106874.1
hsa-miR-455-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000440495
Biotype: lincRNA
Gene id: ENSG00000228272
Gene Name: AC106874.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
188-203
0.029
1
6mer
7-30
0.004
1
AC114776.3
hsa-miR-455-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3735-3760
0.018
1
6mer
3070-3079
0.010
1
6mer
2697-2713
0.003
0
6mer
2328-2337
0.003
0
RP11-15B24.5
hsa-miR-455-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457558
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-30
0.034
0
RP11-124N3.2
hsa-miR-455-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515123
Biotype: lincRNA
Gene id: ENSG00000251487
Gene Name: RP11-124N3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-90
0.034
1
RP11-493E12.1
hsa-miR-455-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607743
Biotype: lincRNA
Gene id: ENSG00000271889
Gene Name: RP11-493E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-101
0.019
1
7mer
15-30
0.014
1
XLOC_014369
hsa-miR-455-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029696
Biotype: transcript isomorph
Gene id: XLOC_014369
Gene Name: XLOC_014369
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
298-313
0.033
0
XLOC_005737
hsa-miR-455-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011496
Biotype: transcript isomorph
Gene id: XLOC_005737
Gene Name: XLOC_005737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-194
0.013
2
7mer
5316-5326
0.008
3
7mer
4718-4737
0.007
4
8mer+wobble
5278-5297
0.004
0
6mer
4497-4508
0.002
2
XLOC_008282
hsa-miR-455-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017630
Biotype: transcript isomorph
Gene id: XLOC_008282
Gene Name: XLOC_008282
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-81
0.033
1
LINC00486
hsa-miR-455-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414054
Biotype: lincRNA
Gene id: ENSG00000230876
Gene Name: LINC00486
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1647-1671
0.033
2
LINC00638
hsa-miR-455-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555578
Biotype: lincRNA
Gene id: ENSG00000258701
Gene Name: LINC00638
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1949-1962
0.009
0
6mer
1726-1738
0.009
1
7mer
1226-1235
0.008
1
7mer
1311-1323
0.007
1
SOX2-OT
hsa-miR-455-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598867
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-56
0.029
0
6mer
109-117
0.004
1
RP11-746B8.1
hsa-miR-455-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578782
Biotype: antisense
Gene id: ENSG00000263765
Gene Name: RP11-746B8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-147
0.033
0
RP11-517I3.1
hsa-miR-455-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515808
Biotype: antisense
Gene id: ENSG00000250602
Gene Name: RP11-517I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
583-593
0.033
0
XLOC_010666
hsa-miR-455-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022061
Biotype: transcript isomorph
Gene id: XLOC_010666
Gene Name: XLOC_010666
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-208
0.033
1
RP11-95I16.6
hsa-miR-455-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000613871
Biotype: lincRNA
Gene id: ENSG00000278484
Gene Name: RP11-95I16.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-61
0.033
0
RP3-340N1.2
hsa-miR-455-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417884
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
663-675
0.033
1
XLOC_001386
hsa-miR-455-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003598
Biotype: transcript isomorph
Gene id: XLOC_001386
Gene Name: XLOC_001386
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1184-1195
0.022
3
7mer
192-200
0.011
1
AC018890.4
hsa-miR-455-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416004
Biotype: lincRNA
Gene id: ENSG00000237104
Gene Name: AC018890.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
681-703
0.033
0
BLOC1S5-TXNDC5
hsa-miR-455-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037616.1
Biotype: sense
Gene id: NR_037616.1 (gene)
Gene Name: BLOC1S5-TXNDC5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2832-2854
0.025
8
6mer
2052-2065
0.004
10
7mer
3230-3241
0.003
2
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