LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-713D19.1
hsa-miR-375
0.905
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609581
Biotype: lincRNA
Gene id: ENSG00000273233
Gene Name: RP11-713D19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-39
0.047
1
XLOC_005847
hsa-miR-375
0.902
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012290
Biotype: transcript isomorph
Gene id: XLOC_005847
Gene Name: XLOC_005847
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
983-1001
0.020
1
6mer
5-30
0.008
1
6mer
256-260
0.007
2
6mer
393-415
0.006
1
6mer
749-753
0.005
1
RP11-626G11.3
hsa-miR-375
0.901
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567236
Biotype: antisense
Gene id: ENSG00000261759
Gene Name: RP11-626G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
911-933
0.025
5
6mer
1093-1112
0.009
6
6mer
116-140
0.007
1
6mer
110-120
0.006
0
AC159540.1
hsa-miR-375
0.901
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610408
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
398-421
0.017
1
6mer
2-23
0.008
0
6mer
2674-2695
0.006
0
6mer
1181-1202
0.003
0
RP11-369C8.1
hsa-miR-375
0.901
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557602
Biotype: lincRNA
Gene id: ENSG00000258616
Gene Name: RP11-369C8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
454-481
0.021
1
7mer
186-210
0.013
3
7mer
338-362
0.007
1
6mer
164-180
0.005
2
XLOC_012784
hsa-miR-375
0.900
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
496-517
0.014
0
6mer
607-617
0.013
0
6mer
390-402
0.012
0
6mer
1186-1204
0.007
0
AC002306.1
hsa-miR-375
0.900
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000559614
Biotype: antisense
Gene id: ENSG00000259242
Gene Name: AC002306.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
771-791
0.014
1
7mer
705-717
0.013
0
6mer
671-697
0.006
1
6mer
683-707
0.005
0
6mer
675-702
0.005
0
6mer
700-722
0.004
0
SNHG14
hsa-miR-375
0.898
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000580438
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1419-1430
0.021
0
6mer
328-332
0.007
1
6mer
1401-1421
0.007
0
6mer
627-646
0.005
1
6mer
162-182
0.005
0
AC004257.1
hsa-miR-375
0.898
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593588
Biotype: lincRNA
Gene id: ENSG00000269635
Gene Name: AC004257.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
123-135
0.009
1
6mer
128-150
0.009
1
6mer
113-117
0.007
0
6mer
133-150
0.007
0
6mer
148-175
0.007
0
6mer
155-179
0.007
0
C1orf132
hsa-miR-375
0.898
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14598-14620
0.019
3
6mer
155-178
0.009
4
7mer
2123-2139
0.006
4
6mer
6418-6443
0.002
4
7mer
2293-2315
0.002
1
6mer
13826-13847
0.002
0
6mer
9746-9754
0.002
0
6mer
11829-11852
0.002
2
6mer
7123-7150
0.001
1
RP11-372E1.4
hsa-miR-375
0.898
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479792
Biotype: antisense
Gene id: ENSG00000243818
Gene Name: RP11-372E1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-86
0.026
1
7mer
540-551
0.013
1
6mer
323-339
0.007
3
RP4-671O14.7
hsa-miR-375
0.897
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
18827-18854
0.006
0
6mer
18617-18621
0.005
1
6mer
18440-18454
0.004
0
7mer
16880-16902
0.004
1
6mer
16352-16356
0.003
3
6mer
11972-11996
0.003
1
6mer
18390-18401
0.002
1
6mer
14492-14518
0.002
1
6mer
12652-12679
0.002
0
6mer
9667-9686
0.002
0
6mer
16931-16948
0.002
1
6mer
4889-4912
0.002
Not Conserved
6mer
7260-7286
0.002
0
6mer
6082-6106
0.002
0
6mer
15044-15063
0.001
0
6mer
14204-14223
0.001
1
6mer
5948-5967
0.001
0
6mer
7248-7258
0.001
0
6mer
7254-7280
0.001
0
6mer
14432-14447
0.001
0
6mer
7733-7747
0.001
0
RP1-101G11.3
hsa-miR-375
0.897
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6436-6458
0.014
8
7mer
5368-5387
0.010
5
6mer
10253-10273
0.007
6
6mer
10376-10399
0.003
2
6mer
3654-3668
0.003
3
7mer
3738-3762
0.003
1
7mer
4132-4153
0.002
0
6mer
1743-1769
0.002
0
6mer
8830-8847
0.001
1
6mer
1761-1783
0.001
0
6mer
1781-1793
0.001
0
6mer
1784-1788
0.001
Not Conserved
RP11-22A3.2
hsa-miR-375
0.897
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506899
Biotype: lincRNA
Gene id: ENSG00000250371
Gene Name: RP11-22A3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
833-851
0.012
Not Conserved
7mer
498-522
0.007
0
6mer
29-51
0.006
0
7mer
859-882
0.005
Not Conserved
6mer
160-184
0.004
0
6mer
417-434
0.003
Not Conserved
6mer
841-868
0.003
2
6mer
1332-1357
0.002
1
6mer
1224-1247
0.002
1
6mer
1218-1243
0.001
1
RP11-536K7.3
hsa-miR-375
0.896
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000397264
Biotype: antisense
Gene id: ENSG00000232807
Gene Name: RP11-536K7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-22
0.029
1
6mer
105-109
0.006
Not Conserved
6mer
448-456
0.004
0
6mer
456-476
0.003
Not Conserved
6mer
2804-2827
0.002
Not Conserved
6mer
479-498
0.002
Not Conserved
XLOC_001281
hsa-miR-375
0.895
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001896
Biotype: transcript isomorph
Gene id: XLOC_001281
Gene Name: XLOC_001281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-38
0.032
0
7mer
287-313
0.014
1
RP11-96K19.4
hsa-miR-375
0.895
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
128-145
0.015
1
6mer
110-126
0.014
1
6mer
5080-5100
0.009
1
6mer
2405-2423
0.005
1
6mer
4168-4187
0.002
0
RP11-173P15.3
hsa-miR-375
0.895
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535720
Biotype: antisense
Gene id: ENSG00000256364
Gene Name: RP11-173P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-258
0.018
3
6mer
101-126
0.008
2
6mer
216-240
0.007
4
6mer
107-132
0.006
1
6mer
113-132
0.006
2
RP11-806K15.1
hsa-miR-375
0.895
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514864
Biotype: antisense
Gene id: ENSG00000249106
Gene Name: RP11-806K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1089-1103
0.018
1
6mer
15-40
0.017
12
6mer
916-940
0.006
8
6mer
394-403
0.005
2
RP11-452H21.2
hsa-miR-375
0.894
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527030
Biotype: antisense
Gene id: ENSG00000254649
Gene Name: RP11-452H21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-203
0.045
0
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