LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
AC159540.1
hsa-miR-375
0.917
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000612970
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-154
0.021
1
7mer
960-984
0.019
0
7mer
614-638
0.011
0
XLOC_010469
hsa-miR-375
0.917
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021501
Biotype: transcript isomorph
Gene id: XLOC_010469
Gene Name: XLOC_010469
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-179
0.018
0
8mer
258-281
0.014
0
7mer
390-412
0.009
0
6mer
1166-1186
0.007
3
6mer
768-784
0.002
1
XLOC_000264
hsa-miR-375
0.916
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000048
Biotype: transcript isomorph
Gene id: XLOC_000264
Gene Name: XLOC_000264
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-249
0.028
3
7mer
678-701
0.013
1
6mer
1396-1414
0.005
1
6mer
1719-1738
0.004
1
RP11-262H14.3
hsa-miR-375
0.916
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612590
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-386
0.046
0
6mer
568-593
0.004
Not Conserved
RP3-330M21.5
hsa-miR-375
0.916
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000500590
Biotype: antisense
Gene id: ENSG00000245261
Gene Name: RP3-330M21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-74
0.045
1
6mer
319-341
0.005
1
XLOC_004143
hsa-miR-375
0.915
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008638
Biotype: transcript isomorph
Gene id: XLOC_004143
Gene Name: XLOC_004143
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-343
0.050
1
ROR1-AS1
hsa-miR-375
0.914
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412349
Biotype: antisense
Gene id: ENSG00000223949
Gene Name: ROR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1229-1254
0.007
6
6mer
141-153
0.006
1
6mer
146-158
0.006
1
6mer
131-143
0.006
0
6mer
136-148
0.005
0
6mer
151-163
0.005
0
6mer
156-183
0.005
0
6mer
161-188
0.005
Not Conserved
6mer
647-674
0.004
1
RP11-227D13.4
hsa-miR-375
0.914
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559165
Biotype: lincRNA
Gene id: ENSG00000259469
Gene Name: RP11-227D13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-361
0.038
2
6mer
22-47
0.011
1
RP11-266O8.1
hsa-miR-375
0.914
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556519
Biotype: lincRNA
Gene id: ENSG00000257060
Gene Name: RP11-266O8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-136
0.022
6
7mer
842-864
0.015
0
7mer
128-152
0.013
1
XLOC_013040
hsa-miR-375
0.913
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026991
Biotype: transcript isomorph
Gene id: XLOC_013040
Gene Name: XLOC_013040
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
958-980
0.044
9
6mer
595-617
0.005
4
RP11-557H15.4
hsa-miR-375
0.912
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418837
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
770-794
0.049
11
RP11-154H23.3
hsa-miR-375
0.910
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604491
Biotype: lincRNA
Gene id: ENSG00000270562
Gene Name: RP11-154H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2146-2169
0.016
0
6mer
154-181
0.009
5
6mer
2399-2416
0.008
3
6mer
1795-1819
0.005
6
6mer
658-683
0.004
5
6mer
2434-2448
0.004
0
6mer
1322-1340
0.004
4
CTC-137K3.1
hsa-miR-375
0.910
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602328
Biotype: sense_intronic
Gene id: ENSG00000270137
Gene Name: CTC-137K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-361
0.025
2
7mer
491-509
0.024
0
AC011518.2
hsa-miR-375
0.909
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592668
Biotype: lincRNA
Gene id: ENSG00000267133
Gene Name: AC011518.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-53
0.048
9
CECR7
hsa-miR-375
0.908
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609932
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-371
0.029
1
6mer
530-548
0.010
1
6mer
481-505
0.009
1
RP11-734K23.9
hsa-miR-375
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000613749
Biotype: lincRNA
Gene id: ENSG00000277701
Gene Name: RP11-734K23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2410-2433
0.023
1
6mer
2808-2829
0.008
0
6mer
136-157
0.007
0
6mer
267-286
0.007
0
6mer
1629-1650
0.003
0
AC005154.6
hsa-miR-375
0.907
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584023
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-192
0.033
0
6mer
173-192
0.015
0
RP11-391H12.8
hsa-miR-375
0.906
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000621449
Biotype: sense_intronic
Gene id: ENSG00000276434
Gene Name: RP11-391H12.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-20
0.024
1
7mer
219-235
0.015
Not Conserved
6mer
79-103
0.008
1
RP13-216E22.5
hsa-miR-375
0.905
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603360
Biotype: sense_overlapping
Gene id: ENSG00000271199
Gene Name: RP13-216E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-228
0.048
0
SNHG14
hsa-miR-375
0.905
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-128
0.026
3
7mer
2069-2084
0.008
2
7mer
3090-3104
0.007
3
6mer
6800-6820
0.002
1
6mer
720-742
0.002
0
6mer
2837-2856
0.002
1
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