LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP4-568C11.4
hsa-miR-375
0.931
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-326
0.053
0
XLOC_007035
hsa-miR-375
0.929
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15197-15221
0.011
0
7mer
6115-6132
0.007
0
8mer
14374-14397
0.006
0
8mer
14817-14839
0.006
Not Conserved
7mer
15420-15435
0.003
0
7mer
13928-13952
0.003
Not Conserved
7mer
14670-14692
0.003
0
6mer
3535-3544
0.002
1
6mer
6869-6896
0.002
0
6mer
2365-2381
0.002
1
6mer
12524-12550
0.002
0
7mer
14520-14544
0.002
Not Conserved
6mer
14966-14985
0.002
0
6mer
9831-9855
0.002
0
6mer
15118-15133
0.001
0
DLEU2
hsa-miR-375
0.929
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000425586
Biotype: antisense
Gene id: ENSG00000231607
Gene Name: DLEU2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1105-1129
0.037
10
7mer
636-655
0.015
2
XLOC_012567
hsa-miR-375
0.929
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00026154
Biotype: transcript isomorph
Gene id: XLOC_012567
Gene Name: XLOC_012567
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1440-1463
0.053
6
MIR4534
hsa-miR-375
0.928
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7285-7305
0.007
1
6mer
95-117
0.006
0
6mer
255-278
0.005
1
6mer
256-283
0.004
0
6mer
276-298
0.004
0
6mer
50365-50383
0.003
9
7mer
48767-48793
0.003
0
6mer
15348-15369
0.002
4
6mer
22493-22513
0.002
1
6mer
43057-43084
0.002
Not Conserved
6mer
40283-40309
0.002
1
6mer
27852-27877
0.002
Not Conserved
6mer
3821-3843
0.002
0
6mer
2536-2562
0.002
0
6mer
13858-13882
0.001
Not Conserved
6mer
16935-16961
0.001
1
6mer
27879-27889
0.001
0
6mer
27870-27883
0.001
0
6mer
2560-2572
0.001
0
6mer
2542-2567
0.001
0
6mer
22493-22518
0.001
0
6mer
13905-13909
0.001
Not Conserved
XLOC_012257
hsa-miR-375
0.926
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025439
Biotype: transcript isomorph
Gene id: XLOC_012257
Gene Name: XLOC_012257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-322
0.052
0
MIR222HG
hsa-miR-375
0.925
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602507
Biotype: lincRNA
Gene id: ENSG00000270069
Gene Name: MIR222HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1508-1525
0.042
9
6mer
1227-1243
0.009
8
RP11-346D14.1
hsa-miR-375
0.925
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561320
Biotype: lincRNA
Gene id: ENSG00000259380
Gene Name: RP11-346D14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1789-1800
0.015
Not Conserved
7mer
307-332
0.008
0
6mer
30-56
0.006
0
7mer
2125-2142
0.005
Not Conserved
6mer
154-176
0.004
0
6mer
473-498
0.004
0
6mer
352-377
0.003
0
6mer
386-400
0.003
0
6mer
938-958
0.003
0
6mer
1246-1259
0.002
0
NUTM2B-AS1
hsa-miR-375
0.924
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-144
0.021
1
6mer
505-509
0.011
4
7mer
1663-1668
0.005
0
7mer
5813-5834
0.004
0
6mer
1136-1159
0.003
Not Conserved
6mer
1560-1585
0.003
3
6mer
1047-1073
0.002
1
6mer
2037-2056
0.002
0
6mer
1127-1147
0.001
1
RP11-334C17.5
hsa-miR-375
0.923
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572730
Biotype: antisense
Gene id: ENSG00000262580
Gene Name: RP11-334C17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
705-731
0.051
1
AC005757.7
hsa-miR-375
0.922
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589594
Biotype: lincRNA
Gene id: ENSG00000267037
Gene Name: AC005757.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
231-253
0.051
0
RP11-180N14.1
hsa-miR-375
0.922
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000606582
Biotype: lincRNA
Gene id: ENSG00000272511
Gene Name: RP11-180N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-209
0.026
3
7mer
559-575
0.025
5
XLOC_009511
hsa-miR-375
0.922
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020103
Biotype: transcript isomorph
Gene id: XLOC_009511
Gene Name: XLOC_009511
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
242-263
0.015
0
6mer
287-303
0.015
0
6mer
478-499
0.011
0
6mer
523-539
0.010
0
LINC00293
hsa-miR-375
0.921
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-502
0.044
1
6mer
65-84
0.007
0
MUC19
hsa-miR-375
0.920
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5087-5110
0.003
4
6mer
1968-1995
0.003
5
6mer
17701-17717
0.002
2
6mer
23610-23623
0.002
0
6mer
1799-1818
0.002
4
6mer
19881-19894
0.002
0
6mer
9253-9274
0.002
2
6mer
20281-20302
0.002
3
6mer
5668-5686
0.002
3
6mer
18319-18344
0.002
0
6mer
2199-2217
0.002
1
6mer
8744-8764
0.002
1
6mer
14520-14540
0.002
2
6mer
13315-13340
0.002
0
6mer
19675-19691
0.002
0
6mer
15540-15560
0.001
1
6mer
6309-6330
0.001
1
6mer
7584-7600
0.001
1
6mer
12248-12268
0.001
0
6mer
8025-8047
0.001
1
6mer
10841-10861
0.001
0
6mer
7721-7741
0.001
0
6mer
13740-13760
0.001
Not Conserved
6mer
12395-12415
0.001
Not Conserved
6mer
5223-5248
0.001
3
6mer
6810-6832
0.001
3
6mer
8207-8227
0.001
1
6mer
6924-6943
0.001
1
6mer
6662-6682
0.001
Not Conserved
6mer
7013-7033
0.001
1
6mer
6752-6772
0.001
1
6mer
9351-9364
0.001
1
6mer
8087-8107
0.001
1
RP11-37L2.1
hsa-miR-375
0.919
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000442716
Biotype: lincRNA
Gene id: ENSG00000234535
Gene Name: RP11-37L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-270
0.050
8
XLOC_013467
hsa-miR-375
0.919
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028113
Biotype: transcript isomorph
Gene id: XLOC_013467
Gene Name: XLOC_013467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-119
0.021
0
7mer
2990-3010
0.013
1
7mer
2560-2583
0.012
0
7mer
2385-2406
0.004
0
RP11-182L21.5
hsa-miR-375
0.918
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000606384
Biotype: sense_intronic
Gene id: ENSG00000272489
Gene Name: RP11-182L21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-52
0.020
0
7mer
1274-1291
0.013
0
6mer
918-943
0.012
2
6mer
1359-1385
0.006
0
RP11-369C8.1
hsa-miR-375
0.918
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554711
Biotype: lincRNA
Gene id: ENSG00000258616
Gene Name: RP11-369C8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-409
0.025
1
7mer
178-202
0.014
3
7mer
267-291
0.006
1
6mer
156-172
0.005
2
CTD-2076M15.1
hsa-miR-375
0.917
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561587
Biotype: lincRNA
Gene id: ENSG00000260683
Gene Name: CTD-2076M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1634
0.032
0
7mer
1486-1510
0.018
0
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