LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
LINC01445
hsa-miR-375
0.960
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000458615
Biotype: lincRNA
Gene id: ENSG00000231427
Gene Name: LINC01445
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-46
0.031
3
7mer
36-57
0.019
1
6mer
267-289
0.012
7
RP11-397A16.3
hsa-miR-375
0.958
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2141-2163
0.030
1
6mer
2070-2090
0.012
1
6mer
1825-1846
0.010
1
6mer
970-989
0.009
1
MLK7-AS1
hsa-miR-375
0.958
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423106
Biotype: antisense
Gene id: ENSG00000238133
Gene Name: MLK7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-327
0.025
9
7mer
672-684
0.021
12
7mer
2334-2359
0.013
0
6mer
1993-2010
0.004
2
LINC01240
hsa-miR-375
0.957
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602434
Biotype: lincRNA
Gene id: ENSG00000270109
Gene Name: LINC01240
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-120
0.040
1
7mer
45-70
0.021
0
RP11-776A13.3
hsa-miR-375
0.957
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551287
Biotype: lincRNA
Gene id: ENSG00000257756
Gene Name: RP11-776A13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-86
0.061
0
LOC284581
hsa-miR-375
0.955
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046098.1
Biotype: lincRNA
Gene id: NR_046098.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1512-1531
0.023
1
6mer
1839-1864
0.015
1
7mer
1270-1293
0.009
0
6mer
929-950
0.008
1
6mer
1098-1112
0.006
1
HOXA-AS3
hsa-miR-375
0.955
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000518947
Biotype: antisense
Gene id: ENSG00000254369
Gene Name: HOXA-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3911-3929
0.048
5
7mer
712-737
0.013
10
XLOC_004760
hsa-miR-375
0.954
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010284
Biotype: transcript isomorph
Gene id: XLOC_004760
Gene Name: XLOC_004760
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-268
0.042
0
7mer
114-136
0.018
0
FLJ26245
hsa-miR-375
0.953
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562769
Biotype: lincRNA
Gene id: ENSG00000261122
Gene Name: FLJ26245
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
533-553
0.060
0
RP11-231E4.2
hsa-miR-375
0.953
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000567168
Biotype: lincRNA
Gene id: ENSG00000259779
Gene Name: RP11-231E4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1687-1703
0.060
Not Conserved
AC002519.8
hsa-miR-375
0.953
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570073
Biotype: sense_intronic
Gene id: ENSG00000259810
Gene Name: AC002519.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2658-2672
0.018
0
6mer
2420-2434
0.012
1
6mer
2274-2287
0.012
1
6mer
2403-2429
0.008
0
6mer
2509-2531
0.008
0
6mer
2427-2439
0.002
Not Conserved
LINC00238
hsa-miR-375
0.952
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000389594
Biotype: lincRNA
Gene id: ENSG00000196553
Gene Name: LINC00238
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
700-726
0.018
1
6mer
331-347
0.013
9
6mer
480-499
0.011
8
7mer
937-958
0.007
Not Conserved
6mer
948-974
0.005
2
6mer
506-533
0.005
5
RP11-440L14.4
hsa-miR-375
0.950
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000607877
Biotype: antisense
Gene id: ENSG00000272588
Gene Name: RP11-440L14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-47
0.059
1
ZRANB2-AS2
hsa-miR-375
0.950
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000590186
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-406
0.034
0
7mer
65-85
0.025
5
RMST
hsa-miR-375
0.950
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552411
Biotype: retained_intron
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-234
0.051
8
6mer
311-338
0.008
9
RP11-69I8.2
hsa-miR-375
0.950
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454596
Biotype: lincRNA
Gene id: ENSG00000236673
Gene Name: RP11-69I8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1318-1331
0.024
1
6mer
1855-1877
0.013
1
6mer
1984-1997
0.011
1
6mer
1891-1914
0.011
1
LINC00861
hsa-miR-375
0.949
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500989
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1786-1806
0.023
0
7mer
666-688
0.018
1
6mer
4959-4976
0.006
1
6mer
4853-4879
0.003
1
6mer
3746-3767
0.003
2
6mer
3987-4005
0.003
1
6mer
1310-1329
0.002
1
6mer
3927-3940
0.001
1
6mer
1777-1795
0.001
1
CTD-2561J22.5
hsa-miR-375
0.948
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3985-4008
0.021
1
7mer
2270-2296
0.011
1
7mer
3060-3074
0.009
1
6mer
4186-4206
0.008
1
6mer
3690-3714
0.005
1
6mer
3454-3475
0.004
1
XLOC_008538
hsa-miR-375
0.948
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1587-1612
0.027
1
7mer
319-344
0.016
0
7mer
198-210
0.011
0
6mer
72-91
0.005
Not Conserved
XLOC_002576
hsa-miR-375
0.948
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005945
Biotype: transcript isomorph
Gene id: XLOC_002576
Gene Name: XLOC_002576
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-163
0.058
0
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