LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RBM5-AS1
hsa-miR-375
0.972
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_045388.1
Biotype: antisense
Gene id: NR_045388.1 (gene)
Gene Name: RBM5-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1084-1100
0.028
11
7mer
1184-1203
0.015
3
6mer
1224-1244
0.007
6
6mer
757-779
0.005
8
6mer
1289-1315
0.005
0
6mer
629-642
0.004
5
6mer
479-501
0.004
0
CTD-2541J13.2
hsa-miR-375
0.971
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583493
Biotype: antisense
Gene id: ENSG00000263424
Gene Name: CTD-2541J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
109-134
0.066
1
6mer
1855-1877
0.002
4
AC079630.2
hsa-miR-375
0.971
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000417422
Biotype: lincRNA
Gene id: ENSG00000223914
Gene Name: AC079630.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-520
0.036
1
7mer
219-238
0.015
0
6mer
273-299
0.006
1
6mer
439-466
0.005
0
6mer
285-304
0.005
0
RP13-753N3.1
hsa-miR-375
0.970
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584157
Biotype: antisense
Gene id: ENSG00000263531
Gene Name: RP13-753N3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
566-590
0.053
0
6mer
279-302
0.014
0
XLOC_000440
hsa-miR-375
0.969
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001179
Biotype: transcript isomorph
Gene id: XLOC_000440
Gene Name: XLOC_000440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-175
0.053
1
6mer
161-188
0.014
1
AC114776.3
hsa-miR-375
0.969
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
585-601
0.042
1
6mer
102-119
0.008
0
6mer
558-580
0.008
1
6mer
1163-1183
0.008
1
XLOC_011157
hsa-miR-375
0.969
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2850-2875
0.067
1
RP11-691G17.1
hsa-miR-375
0.968
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1133-1151
0.032
1
7mer
560-570
0.013
0
6mer
653-671
0.009
1
6mer
974-994
0.007
1
6mer
710-731
0.006
0
TSIX
hsa-miR-375
0.968
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
37003-37019
0.007
3
7mer
30958-30984
0.006
2
7mer
35205-35223
0.004
0
6mer
261-285
0.004
1
7mer
35633-35654
0.003
1
7mer
35723-35741
0.003
1
7mer
20265-20280
0.003
2
6mer
27388-27404
0.003
2
6mer
9649-9653
0.002
0
6mer
33340-33350
0.002
0
7mer
29403-29428
0.002
3
6mer
21864-21887
0.002
0
6mer
7695-7704
0.002
0
6mer
23109-23128
0.002
1
6mer
35574-35600
0.002
3
6mer
28539-28562
0.002
1
6mer
30407-30423
0.002
0
6mer
35411-35437
0.002
2
6mer
3850-3869
0.002
1
6mer
29360-29382
0.002
0
6mer
20951-20973
0.002
1
6mer
5893-5909
0.001
0
6mer
33436-33453
0.001
1
6mer
25242-25257
0.001
1
6mer
35480-35499
0.001
3
6mer
20313-20339
0.001
2
6mer
34240-34255
0.001
3
6mer
34137-34160
0.001
1
6mer
28300-28319
0.001
1
CTD-2541J13.2
hsa-miR-375
0.967
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581951
Biotype: antisense
Gene id: ENSG00000263424
Gene Name: CTD-2541J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
109-134
0.066
1
ZNF571-AS1
hsa-miR-375
0.967
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592575
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-260
0.066
1
XLOC_000669
hsa-miR-375
0.966
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001368
Biotype: transcript isomorph
Gene id: XLOC_000669
Gene Name: XLOC_000669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
22-46
0.066
0
ST8SIA6-AS1
hsa-miR-375
0.966
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000377597
Biotype: antisense
Gene id: ENSG00000204832
Gene Name: ST8SIA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1778-1800
0.026
2
7mer
544-568
0.015
2
7mer
1344-1364
0.010
1
6mer
1679-1700
0.006
0
6mer
1052-1076
0.004
1
6mer
570-583
0.004
3
XLOC_002866
hsa-miR-375
0.966
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006263
Biotype: transcript isomorph
Gene id: XLOC_002866
Gene Name: XLOC_002866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-46
0.065
0
CTD-2017D11.1
hsa-miR-375
0.966
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1646-1650
0.016
1
6mer
1620-1645
0.009
0
6mer
1643-1655
0.008
0
6mer
1673-1685
0.005
Not Conserved
6mer
1678-1690
0.005
Not Conserved
6mer
1668-1680
0.005
Not Conserved
6mer
1663-1675
0.005
Not Conserved
6mer
1658-1670
0.004
Not Conserved
6mer
1653-1665
0.004
Not Conserved
6mer
1648-1660
0.004
Not Conserved
RP11-132A1.4
hsa-miR-375
0.964
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419422
Biotype: antisense
Gene id: ENSG00000232445
Gene Name: RP11-132A1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
674-694
0.065
1
XXbac-BPG249D20.9
hsa-miR-375
0.964
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415195
Biotype: antisense
Gene id: ENSG00000235781
Gene Name: XXbac-BPG249D20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-598
0.033
0
7mer
709-731
0.020
0
7mer
473-492
0.012
0
XLOC_008014
hsa-miR-375
0.964
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017432
Biotype: transcript isomorph
Gene id: XLOC_008014
Gene Name: XLOC_008014
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1626-1647
0.016
1
7mer
1716-1734
0.013
1
7mer
1198-1216
0.009
0
6mer
1567-1593
0.008
3
6mer
1473-1492
0.006
3
6mer
330-345
0.005
3
6mer
1404-1430
0.004
2
6mer
227-250
0.003
1
CTD-2207A17.1
hsa-miR-375
0.962
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508853
Biotype: lincRNA
Gene id: ENSG00000248461
Gene Name: CTD-2207A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1749-1774
0.025
3
7mer
919-940
0.021
6
7mer
2508-2525
0.014
0
6mer
2124-2146
0.004
1
RP11-244B22.6
hsa-miR-375
0.961
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-58
0.052
0
6mer
1468-1488
0.011
0
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