LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-6B4.1
hsa-miR-375
0.985
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482617
Biotype: lincRNA
Gene id: ENSG00000243694
Gene Name: RP11-6B4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-298
0.038
11
7mer
218-240
0.031
5
7mer
34-53
0.010
0
XLOC_007118
hsa-miR-375
0.985
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015037
Biotype: transcript isomorph
Gene id: XLOC_007118
Gene Name: XLOC_007118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3922-3942
0.018
1
7mer
4337-4356
0.013
0
6mer
3872-3892
0.012
1
6mer
3666-3686
0.007
0
6mer
441-468
0.005
0
6mer
2937-2953
0.004
0
6mer
1418-1438
0.004
0
6mer
3426-3448
0.004
0
6mer
3569-3589
0.004
0
6mer
1755-1778
0.003
0
6mer
2548-2568
0.003
0
6mer
3376-3396
0.002
0
6mer
1373-1394
0.001
0
RP11-386B13.3
hsa-miR-375
0.985
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509017
Biotype: lincRNA
Gene id: ENSG00000250754
Gene Name: RP11-386B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
942-961
0.024
14
7mer
44-65
0.023
2
7mer
2111-2135
0.017
0
6mer
2022-2048
0.007
2
7mer
1375-1397
0.004
1
6mer
444-466
0.004
2
RP11-269F21.3
hsa-miR-375
0.983
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511219
Biotype: lincRNA
Gene id: ENSG00000249815
Gene Name: RP11-269F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
371-391
0.051
1
6mer
198-222
0.013
1
6mer
296-323
0.012
1
SUCLG2-AS1
hsa-miR-375
0.982
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000464420
Biotype: lincRNA
Gene id: ENSG00000241316
Gene Name: SUCLG2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
814-828
0.068
Not Conserved
6mer
753-776
0.005
0
6mer
389-414
0.003
1
RP11-181E10.3
hsa-miR-375
0.980
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603748
Biotype: lincRNA
Gene id: ENSG00000271590
Gene Name: RP11-181E10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-24
0.042
0
7mer
276-295
0.022
1
6mer
1295-1305
0.010
1
RP11-73B2.2
hsa-miR-375
0.980
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000425228
Biotype: lincRNA
Gene id: ENSG00000230600
Gene Name: RP11-73B2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-275
0.056
0
6mer
120-142
0.018
0
XLOC_013278
hsa-miR-375
0.980
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
756-771
0.036
0
6mer
16-40
0.022
0
6mer
298-314
0.016
0
RP4-593C16.4
hsa-miR-375
0.980
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623247
Biotype: antisense
Gene id: ENSG00000279210
Gene Name: RP4-593C16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-347
0.035
1
7mer
296-319
0.026
4
6mer
65-82
0.007
3
6mer
202-214
0.006
1
LOC284581
hsa-miR-375
0.979
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1864-1883
0.024
1
6mer
2191-2216
0.015
1
6mer
858-884
0.009
1
7mer
1622-1645
0.009
0
6mer
1281-1302
0.006
1
6mer
1450-1464
0.005
1
6mer
890-913
0.004
1
RP11-1399P15.1
hsa-miR-375
0.978
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608142
Biotype: antisense
Gene id: ENSG00000273445
Gene Name: RP11-1399P15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2-19
0.073
0
CTD-2006C1.2
hsa-miR-375
0.978
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3873-3891
0.026
0
7mer
3639-3660
0.021
0
6mer
891-913
0.006
1
6mer
3292-3313
0.005
0
6mer
2852-2871
0.004
0
6mer
834-859
0.003
0
6mer
1394-1411
0.003
0
6mer
2885-2910
0.002
0
6mer
2916-2939
0.002
0
RP11-586K12.10
hsa-miR-375
0.977
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
543-566
0.035
0
7mer
1175-1197
0.024
0
6mer
1850-1875
0.013
0
XLOC_011525
hsa-miR-375
0.976
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023729
Biotype: transcript isomorph
Gene id: XLOC_011525
Gene Name: XLOC_011525
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
31-44
0.066
1
6mer
273-298
0.005
1
XLOC_004889
hsa-miR-375
0.976
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010379
Biotype: transcript isomorph
Gene id: XLOC_004889
Gene Name: XLOC_004889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-86
0.041
1
7mer
109-126
0.018
0
6mer
57-81
0.012
1
CTA-796E4.5
hsa-miR-375
0.976
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29565-29580
0.009
2
6mer
31421-31447
0.006
2
7mer
10630-10656
0.006
6
7mer
24671-24695
0.005
Not Conserved
7mer
22845-22861
0.004
Not Conserved
7mer
25107-25132
0.003
1
7mer
17819-17840
0.003
1
6mer
7182-7197
0.002
5
6mer
30639-30660
0.002
1
6mer
29254-29280
0.002
0
6mer
24856-24878
0.002
1
6mer
18271-18295
0.002
1
6mer
24421-24445
0.002
2
6mer
28474-28489
0.002
0
6mer
5746-5761
0.002
1
6mer
8069-8087
0.002
1
6mer
16722-16745
0.002
0
6mer
22518-22538
0.002
1
6mer
25245-25265
0.002
2
6mer
26250-26262
0.002
1
6mer
21385-21406
0.001
1
6mer
14926-14943
0.001
1
6mer
29680-29697
0.001
3
6mer
11395-11417
0.001
0
6mer
23133-23150
0.001
1
6mer
5795-5807
0.001
1
6mer
29565-29586
0.001
4
CTD-2534J5.1
hsa-miR-375
0.975
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517640
Biotype: lincRNA
Gene id: ENSG00000253783
Gene Name: CTD-2534J5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-337
0.055
1
6mer
242-252
0.015
1
RP11-309H21.3
hsa-miR-375
0.974
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
760-782
0.029
0
6mer
3040-3063
0.023
0
6mer
1506-1518
0.006
0
6mer
1252-1277
0.006
0
6mer
1087-1113
0.006
0
RP11-563E2.2
hsa-miR-375
0.973
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503478
Biotype: antisense
Gene id: ENSG00000250027
Gene Name: RP11-563E2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
749-775
0.062
1
6mer
747-764
0.007
4
CTD-2541M15.4
hsa-miR-375
0.972
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607697
Biotype: lincRNA
Gene id: ENSG00000271927
Gene Name: CTD-2541M15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2398-2416
0.020
1
7mer
307-328
0.016
0
7mer
407-427
0.013
1
6mer
1466-1488
0.007
3
6mer
447-471
0.006
2
6mer
355-373
0.005
0
6mer
1514-1541
0.002
0
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