LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
AC007327.5
hsa-miR-372-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440788
Biotype: antisense
Gene id: ENSG00000229679
Gene Name: AC007327.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
417-432
0.042
3
7mer
302-321
0.008
1
BLACAT1
hsa-miR-372-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103783.1
Biotype: sense
Gene id: NR_103783.1 (gene)
Gene Name: BLACAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-90
0.050
7
CTA-221G9.11
hsa-miR-372-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
849-873
0.050
0
RP11-363E6.4
hsa-miR-372-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606235
Biotype: lincRNA
Gene id: ENSG00000272425
Gene Name: RP11-363E6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1742-1758
0.023
1
8mer
772-796
0.019
1
6mer
559-568
0.004
2
6mer
628-648
0.003
1
RP11-234K24.3
hsa-miR-372-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441208
Biotype: antisense
Gene id: ENSG00000232406
Gene Name: RP11-234K24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1780-1800
0.013
3
7mer
41-60
0.012
1
7mer
320-335
0.009
4
6mer
1962-1981
0.007
7
6mer
2604-2628
0.004
1
6mer
1305-1331
0.003
2
LINC00836
hsa-miR-372-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108069.1
Biotype: lincRNA
Gene id: NR_108069.1 (gene)
Gene Name: LINC00836
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1056-1073
0.040
0
6mer
1079-1097
0.005
0
6mer
905-931
0.004
0
AC124861.1
hsa-miR-372-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457178
Biotype: lincRNA
Gene id: ENSG00000227479
Gene Name: AC124861.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-420
0.049
2
XLOC_011677
hsa-miR-372-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024285
Biotype: transcript isomorph
Gene id: XLOC_011677
Gene Name: XLOC_011677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4578-4601
0.013
1
8mer
1453-1467
0.008
1
9mer
4981-5005
0.008
1
6mer
186-196
0.006
1
7mer
203-224
0.005
0
9mer
315-336
0.005
1
9mer
4010-4034
0.003
1
9mer
1889-1909
0.002
0
CTA-941F9.10
hsa-miR-372-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22434-22454
0.018
2
7mer
16356-16372
0.004
4
6mer
892-914
0.003
0
8mer
6452-6478
0.003
1
6mer
9136-9157
0.003
2
7mer
10373-10392
0.003
1
6mer
7723-7727
0.003
0
6mer
10871-10889
0.002
1
6mer
1867-1880
0.002
0
6mer
13579-13605
0.002
0
6mer
1553-1578
0.002
0
6mer
1040-1063
0.002
0
6mer
20333-20343
0.001
0
6mer
19110-19127
0.001
0
XLOC_012997
hsa-miR-372-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
741-761
0.028
1
6mer
566-586
0.015
1
7mer
1718-1735
0.006
Not Conserved
RP11-820I16.3
hsa-miR-372-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592820
Biotype: antisense
Gene id: ENSG00000266955
Gene Name: RP11-820I16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-474
0.028
2
8mer
418-438
0.021
1
LINC01189
hsa-miR-372-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_046203.1
Biotype: lincRNA
Gene id: NR_046203.1 (gene)
Gene Name: LINC01189
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-355
0.048
1
XLOC_010706
hsa-miR-372-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
27-48
0.019
1
6mer
3771-3790
0.017
1
6mer
3915-3935
0.009
0
6mer
2948-2960
0.003
Not Conserved
XLOC_008152
hsa-miR-372-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017504
Biotype: transcript isomorph
Gene id: XLOC_008152
Gene Name: XLOC_008152
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
939-965
0.039
8
6mer
1982-2008
0.005
3
6mer
1526-1547
0.004
3
RP11-1151B14.1
hsa-miR-372-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622635
Biotype: lincRNA
Gene id: ENSG00000276403
Gene Name: RP11-1151B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1239-1259
0.026
1
8mer
608-633
0.018
2
6mer
464-481
0.004
2
LINC00547
hsa-miR-372-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612438
Biotype: lincRNA
Gene id: ENSG00000275226
Gene Name: LINC00547
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-301
0.045
5
6mer
2294-2315
0.002
0
RP3-467K16.4
hsa-miR-372-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427824
Biotype: lincRNA
Gene id: ENSG00000228140
Gene Name: RP3-467K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4638-4657
0.019
1
8mer
4017-4043
0.013
3
9mer
4221-4228
0.011
3
6mer
4523-4547
0.005
3
CTD-2008N3.1
hsa-miR-372-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503415
Biotype: lincRNA
Gene id: ENSG00000250921
Gene Name: CTD-2008N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-319
0.035
4
7mer
510-536
0.012
1
XLOC_007290
hsa-miR-372-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015925
Biotype: transcript isomorph
Gene id: XLOC_007290
Gene Name: XLOC_007290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1406-1431
0.047
4
RP11-669C19.1
hsa-miR-372-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566804
Biotype: lincRNA
Gene id: ENSG00000261734
Gene Name: RP11-669C19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1080-1104
0.015
2
7mer
627-641
0.010
4
7mer
1262-1278
0.008
2
6mer
2250-2260
0.007
1
6mer
319-340
0.007
1
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