LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
MIR6080
hsa-miR-372-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578492
Biotype: processed_transcript
Gene id: ENSG00000215769
Gene Name: MIR6080
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-174
0.058
8
6mer
295-313
0.004
2
AC005592.3
hsa-miR-372-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000566527
Biotype: lincRNA
Gene id: ENSG00000261757
Gene Name: AC005592.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
814-835
0.017
2
7mer
535-554
0.013
1
7mer
453-477
0.010
0
6mer
747-768
0.008
2
6mer
122-126
0.007
Not Conserved
6mer
308-335
0.006
1
PCAT19
hsa-miR-372-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
31-55
0.046
1
6mer
982-992
0.015
1
CTD-2313F11.1
hsa-miR-372-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000371487
Biotype: retained_intron
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-530
0.034
2
8mer
321-340
0.026
0
CTD-2171N6.1
hsa-miR-372-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589125
Biotype: lincRNA
Gene id: ENSG00000267013
Gene Name: CTD-2171N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-174
0.056
10
6mer
1789-1800
0.003
2
6mer
1607-1626
0.001
0
RP1-45N11.1
hsa-miR-372-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569865
Biotype: lincRNA
Gene id: ENSG00000260271
Gene Name: RP1-45N11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1394-1419
0.053
7
6mer
258-281
0.004
3
9mer
793-817
0.003
0
TTTY10
hsa-miR-372-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-277
0.024
0
6mer
204-219
0.022
0
6mer
592-618
0.014
0
RP11-481J2.1
hsa-miR-372-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566019
Biotype: antisense
Gene id: ENSG00000261078
Gene Name: RP11-481J2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-309
0.060
1
XLOC_010154
hsa-miR-372-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020872
Biotype: transcript isomorph
Gene id: XLOC_010154
Gene Name: XLOC_010154
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-342
0.021
1
7mer
1860-1884
0.018
2
7mer
1340-1355
0.012
5
6mer
2279-2301
0.010
6
XLOC_008538
hsa-miR-372-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
741-759
0.024
2
6mer
470-487
0.010
1
6mer
1809-1829
0.009
1
9mer
1946-1970
0.008
0
6mer
1667-1684
0.008
0
HAND2-AS1
hsa-miR-372-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510339
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
918-939
0.029
7
8mer
2562-2583
0.014
8
6mer
641-660
0.008
6
6mer
338-356
0.004
1
6mer
715-739
0.003
4
SIK3-IT1
hsa-miR-372-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000454832
Biotype: sense_intronic
Gene id: ENSG00000231865
Gene Name: SIK3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-350
0.042
7
7mer
1932-1951
0.015
1
LINC01136
hsa-miR-372-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457348
Biotype: lincRNA
Gene id: ENSG00000233791
Gene Name: LINC01136
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
344-362
0.037
1
7mer
877-897
0.018
1
6mer
1358-1383
0.002
0
RP11-586K12.8
hsa-miR-372-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563937
Biotype: antisense
Gene id: ENSG00000260974
Gene Name: RP11-586K12.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-192
0.057
0
RP11-1437A8.3
hsa-miR-372-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569850
Biotype: antisense
Gene id: ENSG00000260419
Gene Name: RP11-1437A8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-91
0.057
1
RP11-56L13.7
hsa-miR-372-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562604
Biotype: antisense
Gene id: ENSG00000260575
Gene Name: RP11-56L13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-91
0.057
1
LOC100128885
hsa-miR-372-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
806-826
0.017
0
8mer
3112-3135
0.015
0
8mer
1423-1444
0.010
0
6mer
4280-4307
0.009
0
6mer
3314-3329
0.005
0
HAND2-AS1
hsa-miR-372-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508534
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
654-675
0.035
7
8mer
2298-2319
0.014
8
6mer
451-475
0.004
4
6mer
338-356
0.003
1
XIST
hsa-miR-372-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4756-4778
0.011
3
7mer
4021-4043
0.008
1
7mer
7348-7367
0.005
2
7mer
9249-9261
0.004
3
6mer
18455-18471
0.004
2
7mer
8828-8853
0.004
1
7mer
2306-2325
0.003
1
6mer
19182-19200
0.003
1
9mer
14003-14027
0.002
1
6mer
9095-9116
0.002
3
6mer
16889-16912
0.002
Not Conserved
6mer
9553-9574
0.002
1
6mer
8464-8484
0.002
1
6mer
13190-13209
0.001
1
6mer
12501-12525
0.001
0
6mer
17539-17562
0.001
1
RP11-466F5.10
hsa-miR-372-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608512
Biotype: lincRNA
Gene id: ENSG00000273365
Gene Name: RP11-466F5.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-46
0.057
1
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