LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
RP11-374M1.2
hsa-miR-372-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-176
0.071
1
XLOC_008295
hsa-miR-372-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4032-4052
0.022
0
9mer
2951-2976
0.019
0
7mer
3434-3446
0.015
0
6mer
1126-1141
0.008
0
6mer
3168-3190
0.007
0
TTTY15
hsa-miR-372-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4032-4052
0.022
0
9mer
2951-2976
0.019
0
7mer
3434-3446
0.015
0
6mer
1126-1141
0.008
0
6mer
3168-3190
0.007
0
TTTY15
hsa-miR-372-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3999-4019
0.022
0
9mer
2918-2943
0.019
0
7mer
3401-3413
0.015
0
6mer
1093-1108
0.008
0
6mer
3135-3157
0.007
0
XLOC_013274
hsa-miR-372-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5628-5651
0.052
1
8mer
980-1004
0.009
0
6mer
4053-4073
0.008
1
AC006548.28
hsa-miR-372-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44309-44335
0.009
0
7mer
4786-4801
0.006
1
8mer
2177-2195
0.006
1
7mer
60925-60945
0.004
0
8mer
2339-2357
0.004
0
9mer
59328-59343
0.003
1
9mer
63299-63317
0.003
1
6mer
41050-41068
0.003
1
7mer
9470-9493
0.003
1
6mer
16543-16560
0.002
1
6mer
28257-28283
0.002
0
7mer
51927-51951
0.002
Not Conserved
9mer
71556-71581
0.002
Not Conserved
9mer
66883-66907
0.002
0
9mer
81629-81653
0.002
1
6mer
59469-59492
0.002
1
6mer
72927-72949
0.002
0
6mer
55725-55742
0.002
0
6mer
67658-67677
0.001
0
6mer
23289-23307
0.001
1
6mer
38121-38138
0.001
1
7mer
41578-41590
0.001
0
6mer
35981-36008
0.001
1
6mer
56463-56488
0.001
0
6mer
12105-12124
0.001
1
6mer
75138-75161
0.001
0
6mer
41470-41495
0.001
1
6mer
16449-16468
0.001
Not Conserved
RP11-344E13.3
hsa-miR-372-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584433
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-30
0.028
0
6mer
372-391
0.023
0
6mer
417-442
0.017
0
RP11-554D14.7
hsa-miR-372-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552154
Biotype: lincRNA
Gene id: ENSG00000257141
Gene Name: RP11-554D14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-423
0.067
0
HAND2-AS1
hsa-miR-372-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2395-2416
0.048
7
6mer
2118-2137
0.010
6
6mer
2192-2216
0.006
4
6mer
244-262
0.004
1
MIR4534
hsa-miR-372-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22887-22911
0.008
3
8mer
16124-16141
0.005
0
7mer
3300-3322
0.005
0
9mer
47354-47378
0.005
0
7mer
15408-15433
0.004
0
9mer
21988-22008
0.003
0
7mer
9235-9255
0.003
1
6mer
19393-19415
0.003
2
7mer
22152-22173
0.002
0
7mer
28177-28191
0.002
1
6mer
27539-27561
0.002
1
9mer
6926-6944
0.002
1
9mer
21675-21699
0.002
0
7mer
23004-23020
0.001
1
9mer
13612-13636
0.001
0
9mer
40033-40056
0.001
1
9mer
39705-39729
0.001
0
9mer
45371-45395
0.001
0
6mer
5766-5785
0.001
1
6mer
29748-29772
0.001
3
9mer
2288-2312
0.001
0
6mer
52420-52440
0.001
0
6mer
26721-26737
0.001
1
6mer
16641-16664
0.001
2
6mer
20672-20695
0.001
5
6mer
23643-23664
0.001
Not Conserved
9mer
27626-27646
0.001
1
9mer
2594-2618
0.001
0
7mer
5263-5286
0.001
0
6mer
36519-36542
0.001
1
6mer
28196-28221
0.001
1
6mer
26753-26773
0.001
1
AC004448.5
hsa-miR-372-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609396
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
640-662
0.067
1
XLOC_000199
hsa-miR-372-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000200
Biotype: transcript isomorph
Gene id: XLOC_000199
Gene Name: XLOC_000199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1982-2002
0.054
1
6mer
952-976
0.012
1
RP11-263K4.3
hsa-miR-372-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548575
Biotype: lincRNA
Gene id: ENSG00000257431
Gene Name: RP11-263K4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1035-1060
0.021
7
8mer
536-550
0.018
1
9mer
709-729
0.010
1
6mer
2461-2488
0.006
4
6mer
2871-2897
0.006
3
8mer
2182-2203
0.004
Not Conserved
HAND2-AS1
hsa-miR-372-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507571
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
706-727
0.035
7
8mer
2350-2371
0.014
8
6mer
429-448
0.008
6
6mer
338-356
0.004
1
6mer
503-527
0.004
4
CTD-2015H6.3
hsa-miR-372-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508000
Biotype: antisense
Gene id: ENSG00000249042
Gene Name: CTD-2015H6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-496
0.047
2
6mer
92-107
0.009
1
9mer
838-862
0.008
1
HAND2-AS1
hsa-miR-372-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616485
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2392-2413
0.044
7
6mer
2115-2134
0.010
6
6mer
2189-2213
0.005
4
6mer
241-259
0.004
1
RP11-809F4.3
hsa-miR-372-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-423
0.063
1
RP1-309I22.2
hsa-miR-372-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28554-28566
0.012
1
7mer
22278-22291
0.009
3
7mer
22777-22789
0.008
8
9mer
26970-26987
0.006
0
6mer
26260-26284
0.005
11
7mer
4386-4402
0.004
0
6mer
24421-24437
0.004
6
6mer
15578-15597
0.002
2
8mer+wobble
18024-18044
0.002
Not Conserved
6mer
13041-13064
0.002
1
6mer
627-651
0.002
1
6mer
21078-21104
0.001
1
6mer
14436-14452
0.001
1
6mer
10715-10731
0.001
1
6mer
2716-2732
0.001
0
6mer
20347-20366
0.001
0
8mer
18037-18056
0.001
1
AC002519.8
hsa-miR-372-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570073
Biotype: sense_intronic
Gene id: ENSG00000259810
Gene Name: AC002519.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2050-2076
0.045
1
6mer
716-740
0.011
1
9mer
1136-1156
0.007
0
HAND2-AS1
hsa-miR-372-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515350
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-804
0.033
7
8mer
2427-2448
0.014
8
6mer
506-525
0.008
6
6mer
338-356
0.004
1
6mer
580-604
0.004
4
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