LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
RP3-417O22.3
hsa-miR-34c-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442184
Biotype: antisense
Gene id: ENSG00000224384
Gene Name: RP3-417O22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-307
0.039
4
6mer
315-339
0.006
1
XLOC_007612
hsa-miR-34c-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015778
Biotype: transcript isomorph
Gene id: XLOC_007612
Gene Name: XLOC_007612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1939-1958
0.023
0
7mer
803-826
0.011
0
7mer
165-188
0.004
1
7mer
645-666
0.003
0
6mer
1487-1504
0.003
Not Conserved
RP11-141A19.1
hsa-miR-34c-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456002
Biotype: antisense
Gene id: ENSG00000229846
Gene Name: RP11-141A19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-137
0.037
0
7mer
48-73
0.007
2
MGC45800
hsa-miR-34c-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000315302
Biotype: antisense
Gene id: ENSG00000177822
Gene Name: MGC45800
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-271
0.023
1
8mer
1841-1864
0.018
4
6mer
1465-1486
0.003
4
LINC00963
hsa-miR-34c-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000419300
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9485-9510
0.010
0
6mer
9364-9387
0.007
3
8mer
2082-2104
0.007
1
6mer
9082-9108
0.004
3
8mer
2446-2471
0.004
0
6mer
295-307
0.003
1
6mer
8780-8794
0.002
0
6mer
8915-8929
0.001
0
6mer
8899-8925
0.001
0
6mer
671-695
0.001
1
6mer
3463-3489
0.001
0
6mer
4803-4829
0.001
1
6mer
3049-3068
0.001
1
6mer
6930-6957
0.001
1
TTTY15
hsa-miR-34c-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-294
0.029
0
6mer
1112-1129
0.010
0
6mer
1127-1151
0.005
0
RP11-1069G10.1
hsa-miR-34c-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557994
Biotype: antisense
Gene id: ENSG00000259370
Gene Name: RP11-1069G10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-473
0.044
8
XLOC_008295
hsa-miR-34c-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-294
0.029
0
6mer
1112-1129
0.010
0
6mer
1127-1151
0.005
0
XLOC_007089
hsa-miR-34c-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7235-7261
0.008
Not Conserved
7mer
9679-9704
0.006
0
7mer
7360-7376
0.005
0
7mer
9625-9640
0.003
0
6mer
8684-8699
0.003
0
7mer
6552-6574
0.003
Not Conserved
6mer
552-579
0.002
Not Conserved
6mer
157-182
0.002
Not Conserved
6mer
345-369
0.002
Not Conserved
6mer
6354-6374
0.002
0
7mer
4615-4633
0.001
Not Conserved
7mer
6265-6285
0.001
Not Conserved
6mer
5586-5604
0.001
Not Conserved
6mer
4927-4950
0.001
Not Conserved
6mer
9554-9575
0.001
Not Conserved
6mer
4710-4726
0.001
Not Conserved
6mer
4818-4833
0.000
Not Conserved
6mer
5570-5595
0.000
Not Conserved
6mer
4814-4833
0.000
Not Conserved
CTD-2303H24.2
hsa-miR-34c-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609578
Biotype: retained_intron
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
670-681
0.018
0
8mer
8-30
0.013
Not Conserved
6mer
353-371
0.013
0
SLC25A25-AS1
hsa-miR-34c-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000418747
Biotype: antisense
Gene id: ENSG00000234771
Gene Name: SLC25A25-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-375
0.017
2
7mer
6031-6049
0.008
1
6mer
153-177
0.003
1
6mer
5156-5175
0.002
1
6mer
172-189
0.002
0
8mer
1894-1915
0.002
0
6mer
3772-3791
0.001
0
6mer
1278-1298
0.001
0
6mer
3311-3328
0.001
0
6mer
4418-4435
0.001
1
6mer
2942-2964
0.001
0
6mer
1554-1575
0.001
1
6mer
4208-4233
0.001
1
6mer
4324-4344
0.001
2
6mer
3594-3620
0.001
0
6mer
1528-1542
0.000
1
6mer
3568-3582
0.000
0
LOC100129917
hsa-miR-34c-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036511.1
Biotype: lincRNA
Gene id: NR_036511.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
662-686
0.043
1
LINC00174
hsa-miR-34c-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026873.1
Biotype: antisense
Gene id: NR_026873.1 (gene)
Gene Name: LINC00174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
270-287
0.005
1
6mer
3480-3503
0.004
1
6mer
445-467
0.003
0
6mer
4366-4392
0.003
0
6mer
3694-3712
0.002
Not Conserved
6mer
835-850
0.002
0
6mer
542-568
0.002
0
7mer
2079-2095
0.002
1
6mer
3320-3343
0.002
1
6mer
2273-2299
0.002
1
6mer
3126-3153
0.002
0
6mer
3683-3703
0.001
0
6mer
1161-1187
0.001
1
6mer
1293-1309
0.001
0
6mer
1884-1900
0.001
0
6mer
2761-2788
0.001
0
6mer
1703-1719
0.001
0
6mer
2430-2446
0.001
1
6mer
2598-2623
0.001
1
7mer
1575-1600
0.001
0
6mer
1093-1113
0.001
0
6mer
2530-2555
0.001
1
6mer
994-1010
0.001
0
6mer
2493-2512
0.001
1
6mer
3095-3121
0.001
0
6mer
2526-2544
0.001
0
6mer
3014-3035
0.000
0
CTA-342B11.3
hsa-miR-34c-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19127-19142
0.015
0
9mer
5478-5501
0.005
0
6mer
862-882
0.004
2
6mer
224-245
0.004
1
6mer
7139-7164
0.002
4
6mer
2294-2313
0.001
1
6mer
4676-4696
0.001
1
6mer
20553-20576
0.001
0
6mer
5663-5689
0.001
0
6mer
5875-5889
0.001
1
6mer
23185-23204
0.001
Not Conserved
6mer
15091-15108
0.001
0
6mer
16167-16180
0.001
0
6mer
9771-9792
0.001
0
6mer
9919-9945
0.001
0
6mer
5998-6022
0.001
0
6mer
21272-21293
0.001
Not Conserved
6mer
21440-21454
0.000
Not Conserved
6mer
21329-21355
0.000
Not Conserved
6mer
21424-21450
0.000
Not Conserved
6mer
21305-21319
0.000
Not Conserved
XLOC_003050
hsa-miR-34c-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006443
Biotype: transcript isomorph
Gene id: XLOC_003050
Gene Name: XLOC_003050
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
545-567
0.031
1
6mer
289-311
0.012
1
RP5-1097F14.3
hsa-miR-34c-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425559
Biotype: antisense
Gene id: ENSG00000235710
Gene Name: RP5-1097F14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-300
0.024
1
8mer
480-505
0.014
1
6mer
726-732
0.002
0
6mer
1161-1178
0.002
0
RP11-266N13.2
hsa-miR-34c-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500224
Biotype: antisense
Gene id: ENSG00000247345
Gene Name: RP11-266N13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-567
0.038
2
7mer
214-235
0.005
1
AC105760.2
hsa-miR-34c-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418430
Biotype: antisense
Gene id: ENSG00000227252
Gene Name: AC105760.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-34
0.038
Not Conserved
6mer
702-717
0.003
0
6mer
1875-1891
0.002
1
FMR1-AS1
hsa-miR-34c-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000598667
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-20
0.025
2
6mer
341-359
0.006
3
6mer
1561-1587
0.005
1
8mer
1598-1618
0.004
0
6mer
1422-1436
0.003
1
XLOC_013020
hsa-miR-34c-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027504
Biotype: transcript isomorph
Gene id: XLOC_013020
Gene Name: XLOC_013020
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-245
0.043
0
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