LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012891
hsa-miR-34c-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026572
Biotype: transcript isomorph
Gene id: XLOC_012891
Gene Name: XLOC_012891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
454-479
0.038
1
6mer
489-508
0.009
1
LINC00293
hsa-miR-34c-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
926-950
0.013
1
6mer
1415-1439
0.012
1
6mer
1560-1584
0.009
1
6mer
1061-1075
0.006
1
6mer
1707-1725
0.006
0
RP1-71H24.6
hsa-miR-34c-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614658
Biotype: lincRNA
Gene id: ENSG00000276343
Gene Name: RP1-71H24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
422-444
0.027
1
6mer
56-80
0.020
1
AC009299.2
hsa-miR-34c-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609940
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-456
0.046
7
RP11-417B4.2
hsa-miR-34c-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423942
Biotype: antisense
Gene id: ENSG00000230826
Gene Name: RP11-417B4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
604-619
0.046
3
RP1-93H18.7
hsa-miR-34c-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606179
Biotype: lincRNA
Gene id: ENSG00000272403
Gene Name: RP1-93H18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-127
0.036
1
7mer
284-302
0.010
1
XLOC_002262
hsa-miR-34c-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004377
Biotype: transcript isomorph
Gene id: XLOC_002262
Gene Name: XLOC_002262
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-408
0.036
2
7mer
93-116
0.010
1
CNOT10-AS1
hsa-miR-34c-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475395
Biotype: antisense
Gene id: ENSG00000251224
Gene Name: CNOT10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-203
0.046
2
XLOC_006128
hsa-miR-34c-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
32-58
0.018
1
6mer
211-236
0.016
1
6mer
1119-1144
0.008
0
6mer
281-307
0.004
0
CTBP1-AS2
hsa-miR-34c-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1642-1667
0.039
1
6mer
1062-1086
0.007
1
XIST
hsa-miR-34c-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1361-1385
0.030
3
6mer
3454-3475
0.003
3
6mer
6869-6892
0.002
5
6mer
7020-7034
0.002
1
6mer
8145-8163
0.002
2
6mer
17382-17404
0.002
1
6mer
17063-17088
0.002
1
6mer
16484-16505
0.001
0
6mer
13971-13997
0.001
0
6mer
6601-6625
0.001
1
6mer
16480-16505
0.001
0
RP11-495P10.8
hsa-miR-34c-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
617-635
0.016
0
6mer
295-322
0.016
0
6mer
331-347
0.014
0
CTD-2561J22.5
hsa-miR-34c-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600469
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
52-73
0.016
1
6mer
189-216
0.013
1
6mer
413-435
0.012
1
6mer
163-185
0.005
0
RP11-862L9.3
hsa-miR-34c-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580580
Biotype: antisense
Gene id: ENSG00000266844
Gene Name: RP11-862L9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-101
0.025
1
8mer+wobble
48-71
0.018
1
6mer
593-619
0.003
1
GYG2-AS1
hsa-miR-34c-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445107
Biotype: antisense
Gene id: ENSG00000235483
Gene Name: GYG2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-157
0.045
4
TTTY15
hsa-miR-34c-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-261
0.030
0
6mer
1079-1096
0.010
0
6mer
1094-1118
0.005
0
TTN-AS1
hsa-miR-34c-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000582847
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
752-770
0.045
6
RP5-1071N3.1
hsa-miR-34c-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449034
Biotype: antisense
Gene id: ENSG00000231105
Gene Name: RP5-1071N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2230-2251
0.031
2
6mer
350-376
0.006
3
6mer
48-70
0.005
2
7mer
848-873
0.002
Not Conserved
6mer
952-973
0.001
Not Conserved
C5orf27
hsa-miR-34c-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000357880
Biotype: lincRNA
Gene id: ENSG00000236882
Gene Name: C5orf27
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
72-98
0.024
0
9mer
314-333
0.021
0
XLOC_001223
hsa-miR-34c-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001838
Biotype: transcript isomorph
Gene id: XLOC_001223
Gene Name: XLOC_001223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
797-822
0.018
1
6mer
1055-1081
0.015
1
6mer
246-263
0.012
1
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