LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
TTN-AS1
hsa-miR-34c-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419746
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3977-3995
0.033
11
6mer
4401-4427
0.006
5
6mer
186-207
0.004
2
7mer
2648-2672
0.004
1
7mer
3052-3071
0.003
7
XLOC_013010
hsa-miR-34c-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
65-91
0.017
0
6mer
136-162
0.014
0
6mer
654-668
0.009
0
6mer
616-642
0.007
0
7mer
8-31
0.003
Not Conserved
6mer
789-806
0.001
Not Conserved
TOLLIP-AS1
hsa-miR-34c-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530897
Biotype: antisense
Gene id: ENSG00000255153
Gene Name: TOLLIP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
894-916
0.050
0
RP11-326I11.3
hsa-miR-34c-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605834
Biotype: lincRNA
Gene id: ENSG00000271646
Gene Name: RP11-326I11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2425-2445
0.018
0
8mer
2289-2306
0.015
2
9mer
1930-1943
0.010
0
6mer
2367-2389
0.005
1
6mer
2309-2336
0.002
1
RP11-443B7.3
hsa-miR-34c-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000549744
Biotype: lincRNA
Gene id: ENSG00000258082
Gene Name: RP11-443B7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
348-364
0.019
0
7mer
98-112
0.018
2
8mer
231-251
0.013
1
ARHGAP5-AS1
hsa-miR-34c-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553596
Biotype: antisense
Gene id: ENSG00000258655
Gene Name: ARHGAP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1037-1054
0.016
1
7mer
529-555
0.012
6
8mer
901-917
0.012
3
7mer
1608-1628
0.006
0
6mer
839-854
0.002
1
6mer
1601-1617
0.001
Not Conserved
LOC100190986
hsa-miR-34c-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2341-2357
0.018
0
6mer
695-717
0.012
0
6mer
559-582
0.010
0
6mer
1797-1815
0.009
0
CTA-212A2.3
hsa-miR-34c-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8470-8489
0.006
Not Conserved
7mer
12510-12528
0.004
0
7mer
7328-7350
0.004
1
6mer
608-631
0.004
0
6mer
320-340
0.004
1
6mer
13914-13941
0.003
1
8mer
892-907
0.003
0
7mer
5115-5141
0.003
1
6mer
474-494
0.002
0
6mer
7537-7564
0.002
1
6mer
13235-13262
0.002
0
6mer
5874-5896
0.002
1
6mer
8637-8659
0.002
1
6mer
10558-10572
0.001
1
6mer
12017-12039
0.001
0
6mer
4936-4956
0.001
1
6mer
4535-4554
0.001
0
6mer
9713-9734
0.001
1
6mer
11448-11474
0.001
0
6mer
4583-4602
0.001
1
6mer
11612-11634
0.001
0
6mer
9743-9760
0.001
0
6mer
11483-11500
0.001
1
RP11-56L13.1
hsa-miR-34c-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566232
Biotype: lincRNA
Gene id: ENSG00000260402
Gene Name: RP11-56L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-200
0.047
Not Conserved
6mer
1028-1054
0.001
Not Conserved
LINC01061
hsa-miR-34c-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037596.1
Biotype: lincRNA
Gene id: NR_037596.1 (gene)
Gene Name: LINC01061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4482-4508
0.004
0
6mer
431-449
0.004
1
6mer
324-341
0.003
0
6mer
4418-4441
0.003
0
6mer
4291-4307
0.002
0
6mer
566-585
0.002
0
6mer
2034-2050
0.002
1
6mer
3904-3931
0.002
0
6mer
2911-2928
0.002
0
6mer
4259-4286
0.002
Not Conserved
6mer
1221-1237
0.001
1
6mer
926-949
0.001
Not Conserved
6mer
3746-3773
0.001
0
6mer
1966-1986
0.001
1
6mer
3077-3104
0.001
0
6mer
3265-3288
0.001
1
6mer
1152-1178
0.001
0
6mer
3420-3436
0.001
0
6mer
3515-3535
0.001
Not Conserved
6mer
2601-2615
0.001
0
6mer
2380-2397
0.001
0
6mer
4227-4252
0.001
Not Conserved
6mer
1495-1520
0.001
0
6mer
3233-3258
0.001
1
6mer
1253-1271
0.001
0
6mer
2698-2721
0.001
0
6mer
1366-1385
0.001
0
6mer
1807-1826
0.001
0
6mer
1870-1882
0.001
0
6mer
3329-3355
0.001
0
6mer
3841-3856
0.001
Not Conserved
6mer
2847-2863
0.001
0
6mer
2843-2863
0.001
0
6mer
3809-3836
0.000
Not Conserved
6mer
2825-2839
0.000
0
6mer
2569-2594
0.000
0
XLOC_012099
hsa-miR-34c-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025294
Biotype: transcript isomorph
Gene id: XLOC_012099
Gene Name: XLOC_012099
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
572-590
0.043
2
6mer
201-227
0.005
1
AC009299.2
hsa-miR-34c-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435692
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-488
0.048
7
LL22NC03-2H8.4
hsa-miR-34c-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412149
Biotype: lincRNA
Gene id: ENSG00000234630
Gene Name: LL22NC03-2H8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-188
0.048
0
C5orf27
hsa-miR-34c-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000436592
Biotype: lincRNA
Gene id: ENSG00000236882
Gene Name: C5orf27
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
72-98
0.024
0
9mer
314-333
0.021
0
6mer
996-1020
0.003
3
RP5-997D16.2
hsa-miR-34c-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429293
Biotype: antisense
Gene id: ENSG00000230163
Gene Name: RP5-997D16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-585
0.030
2
8mer
652-678
0.017
0
XLOC_006242
hsa-miR-34c-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2110-2132
0.017
1
6mer
1919-1932
0.010
1
6mer
1780-1802
0.009
1
6mer
926-943
0.007
1
6mer
1542-1555
0.004
0
XLOC_009231
hsa-miR-34c-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019958
Biotype: transcript isomorph
Gene id: XLOC_009231
Gene Name: XLOC_009231
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
163-187
0.043
0
6mer
386-409
0.005
1
JPX
hsa-miR-34c-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000414209
Biotype: lincRNA
Gene id: ENSG00000225470
Gene Name: JPX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2005-2029
0.041
0
6mer
259-273
0.004
1
6mer
704-726
0.002
0
RP5-1198O20.4
hsa-miR-34c-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447959
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
707-720
0.044
1
7mer
197-224
0.003
Not Conserved
LINC01000
hsa-miR-34c-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9531-9555
0.017
0
6mer
9615-9635
0.002
1
6mer
562-587
0.002
1
6mer
629-652
0.002
1
6mer
4694-4718
0.001
1
6mer
978-1004
0.001
0
6mer
763-779
0.001
0
6mer
8452-8474
0.001
0
6mer
784-811
0.001
0
6mer
3795-3814
0.001
1
6mer
4030-4056
0.001
1
6mer
1135-1152
0.001
0
6mer
817-843
0.001
Not Conserved
6mer
6216-6234
0.001
0
6mer
2935-2954
0.001
0
6mer
2500-2522
0.001
0
6mer
6401-6422
0.001
0
6mer
1513-1538
0.001
Not Conserved
6mer
2732-2758
0.001
0
6mer
2244-2267
0.001
Not Conserved
6mer
1283-1310
0.001
0
6mer
1199-1215
0.001
0
6mer
2606-2629
0.001
0
6mer
1621-1637
0.001
Not Conserved
6mer
3931-3949
0.001
0
6mer
2025-2041
0.001
0
6mer
1769-1792
0.000
Not Conserved
6mer
1956-1972
0.000
0
6mer
1702-1728
0.000
Not Conserved
6mer
2741-2762
0.000
0
6mer
1922-1940
0.000
Not Conserved
6mer
1808-1827
0.000
0
6mer
1522-1542
0.000
Not Conserved
7mer
4071-4088
0.000
0
Funded by:
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