LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
RP5-857K21.1
hsa-miR-34c-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417636
Biotype: lincRNA
Gene id: ENSG00000231709
Gene Name: RP5-857K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
592-602
0.027
0
6mer
731-757
0.015
0
6mer
563-581
0.010
0
RP4-639J15.3
hsa-miR-34c-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000594086
Biotype: lincRNA
Gene id: ENSG00000269446
Gene Name: RP4-639J15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
422-439
0.013
1
6mer
650-666
0.012
1
6mer
170-194
0.012
1
6mer
42-68
0.010
1
6mer
422-443
0.005
0
RP11-56L13.1
hsa-miR-34c-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568730
Biotype: lincRNA
Gene id: ENSG00000260402
Gene Name: RP11-56L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-119
0.052
Not Conserved
AC009299.2
hsa-miR-34c-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445372
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-429
0.052
7
RP11-216M21.7
hsa-miR-34c-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3045-3059
0.017
0
6mer
820-839
0.011
0
6mer
1072-1096
0.009
0
6mer
688-705
0.009
0
6mer
2061-2078
0.006
0
AC009299.2
hsa-miR-34c-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421122
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
802-819
0.052
7
AC073834.3
hsa-miR-34c-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000357045
Biotype: antisense
Gene id: ENSG00000237655
Gene Name: AC073834.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-254
0.052
4
XLOC_001671
hsa-miR-34c-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10088-10099
0.027
0
7mer
8174-8194
0.004
Not Conserved
6mer
10104-10129
0.004
0
6mer
10134-10148
0.004
0
6mer
5088-5112
0.003
0
6mer
233-249
0.002
Not Conserved
6mer
1690-1706
0.001
Not Conserved
6mer
2929-2944
0.001
Not Conserved
6mer
1091-1111
0.001
Not Conserved
6mer
2631-2650
0.001
Not Conserved
6mer
3163-3179
0.001
Not Conserved
6mer
1315-1339
0.001
Not Conserved
6mer
2081-2097
0.001
Not Conserved
6mer
2265-2286
0.001
Not Conserved
6mer
6313-6334
0.001
Not Conserved
6mer
5117-5131
0.000
Not Conserved
6mer
8211-8230
0.000
Not Conserved
CTA-305I2.1
hsa-miR-34c-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000566572
Biotype: antisense
Gene id: ENSG00000261535
Gene Name: CTA-305I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-575
0.038
1
6mer
58-83
0.006
3
7mer
445-460
0.005
0
6mer
495-510
0.003
1
RP11-247I13.11
hsa-miR-34c-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000464523
Biotype: antisense
Gene id: ENSG00000240591
Gene Name: RP11-247I13.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
219-243
0.051
13
RP11-157B13.7
hsa-miR-34c-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599810
Biotype: lincRNA
Gene id: ENSG00000267872
Gene Name: RP11-157B13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
36-58
0.017
0
6mer
243-266
0.014
0
6mer
324-346
0.011
0
6mer
2049-2075
0.003
Not Conserved
6mer
667-676
0.003
Not Conserved
6mer
1476-1498
0.002
Not Conserved
6mer
1334-1360
0.001
Not Conserved
CTD-2017D11.1
hsa-miR-34c-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1391-1410
0.012
1
6mer
568-587
0.011
1
6mer
1098-1124
0.011
1
6mer
1169-1195
0.007
1
6mer
817-839
0.005
0
6mer
881-904
0.005
1
AC009299.2
hsa-miR-34c-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610254
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-419
0.050
7
AL157902.3
hsa-miR-34c-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425010
Biotype: antisense
Gene id: ENSG00000236866
Gene Name: AL157902.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-140
0.044
1
6mer
255-274
0.006
1
LINC01122
hsa-miR-34c-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427421
Biotype: lincRNA
Gene id: ENSG00000233723
Gene Name: LINC01122
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-436
0.046
10
6mer
201-224
0.005
2
RP11-679B19.1
hsa-miR-34c-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000622621
Biotype: antisense
Gene id: ENSG00000277954
Gene Name: RP11-679B19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-579
0.027
7
6mer
220-232
0.008
7
6mer
424-441
0.007
9
6mer
4003-4023
0.003
1
6mer
1057-1080
0.002
3
6mer
3629-3654
0.002
1
6mer
1582-1601
0.001
2
RP11-1437A8.5
hsa-miR-34c-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570288
Biotype: lincRNA
Gene id: ENSG00000261009
Gene Name: RP11-1437A8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-120
0.050
Not Conserved
XLOC_001726
hsa-miR-34c-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003921
Biotype: transcript isomorph
Gene id: XLOC_001726
Gene Name: XLOC_001726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1284-1301
0.040
3
6mer
1055-1079
0.003
1
6mer
1051-1075
0.003
1
6mer
1044-1063
0.003
1
XLOC_010133
hsa-miR-34c-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020848
Biotype: transcript isomorph
Gene id: XLOC_010133
Gene Name: XLOC_010133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-178
0.031
0
6mer
107-133
0.019
0
RP11-1437A8.5
hsa-miR-34c-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565415
Biotype: lincRNA
Gene id: ENSG00000261009
Gene Name: RP11-1437A8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-120
0.050
Not Conserved
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