LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
RP11-247I13.11
hsa-miR-34c-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000483736
Biotype: antisense
Gene id: ENSG00000240591
Gene Name: RP11-247I13.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-210
0.056
13
XLOC_012370
hsa-miR-34c-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1316-1331
0.042
0
6mer
467-489
0.014
0
XLOC_001751
hsa-miR-34c-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003048
Biotype: transcript isomorph
Gene id: XLOC_001751
Gene Name: XLOC_001751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1457-1480
0.031
1
6mer
1720-1739
0.008
0
6mer
1316-1330
0.008
1
6mer
2101-2120
0.005
0
6mer
329-349
0.003
Not Conserved
XLOC_000191
hsa-miR-34c-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-227
0.024
1
7mer
465-490
0.016
1
6mer
141-167
0.015
1
SVIL-AS1
hsa-miR-34c-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414457
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1083-1097
0.047
0
7mer
224-245
0.004
1
6mer
297-315
0.004
1
RP3-470B24.5
hsa-miR-34c-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000538528
Biotype: lincRNA
Gene id: ENSG00000235994
Gene Name: RP3-470B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
715-742
0.011
0
8mer
376-399
0.009
1
8mer
291-314
0.009
0
8mer
249-272
0.007
1
8mer
670-693
0.007
1
8mer
334-357
0.005
0
8mer
544-567
0.005
0
6mer
757-780
0.003
1
XLOC_002759
hsa-miR-34c-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006930
Biotype: transcript isomorph
Gene id: XLOC_002759
Gene Name: XLOC_002759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
148-168
0.032
1
7mer
361-380
0.013
3
6mer
6320-6342
0.004
1
6mer
2992-3018
0.002
2
6mer
1334-1355
0.002
2
6mer
3508-3526
0.002
1
6mer
1344-1361
0.001
3
AC079779.7
hsa-miR-34c-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437798
Biotype: antisense
Gene id: ENSG00000227061
Gene Name: AC079779.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
81-106
0.005
0
6mer
29-54
0.005
0
6mer
133-158
0.004
0
6mer
185-210
0.004
0
6mer
242-262
0.004
0
6mer
289-314
0.004
0
6mer
341-366
0.003
0
6mer
393-418
0.003
0
6mer
4650-4668
0.003
1
6mer
445-470
0.003
0
6mer
554-574
0.002
0
6mer
497-522
0.002
Not Conserved
6mer
606-626
0.002
0
6mer
653-678
0.002
0
6mer
705-730
0.002
0
6mer
757-782
0.002
0
6mer
913-938
0.002
0
6mer
809-834
0.002
Not Conserved
6mer
861-886
0.001
Not Conserved
LINC01515
hsa-miR-34c-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600848
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
720-742
0.054
1
AP001442.2
hsa-miR-34c-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000596385
Biotype: antisense
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-276
0.044
2
6mer
649-669
0.005
1
6mer
855-875
0.004
0
XLOC_005377
hsa-miR-34c-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012543
Biotype: transcript isomorph
Gene id: XLOC_005377
Gene Name: XLOC_005377
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-369
0.032
5
8mer
417-441
0.022
0
XLOC_000831
hsa-miR-34c-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001491
Biotype: transcript isomorph
Gene id: XLOC_000831
Gene Name: XLOC_000831
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
795-814
0.036
3
9mer
852-871
0.018
1
RP11-627G23.1
hsa-miR-34c-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-103
0.051
1
6mer
2466-2486
0.001
1
6mer
2659-2678
0.001
1
6mer
1926-1945
0.001
1
6mer
2472-2490
0.000
0
AC005537.2
hsa-miR-34c-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585996
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
474-498
0.030
1
6mer
227-249
0.013
1
6mer
358-380
0.010
1
XLOC_009222
hsa-miR-34c-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5454-5474
0.016
0
6mer
6102-6124
0.016
0
6mer
5214-5236
0.008
0
6mer
3942-3964
0.007
0
6mer
4479-4499
0.007
0
RP11-206L10.3
hsa-miR-34c-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4734-4748
0.015
0
6mer
4599-4616
0.012
0
6mer
3999-4025
0.010
0
6mer
3335-3357
0.007
0
6mer
2362-2385
0.003
0
6mer
2453-2472
0.003
0
6mer
4603-4625
0.002
Not Conserved
6mer
2498-2520
0.001
Not Conserved
6mer
1258-1279
0.001
Not Conserved
XLOC_010219
hsa-miR-34c-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020953
Biotype: transcript isomorph
Gene id: XLOC_010219
Gene Name: XLOC_010219
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1103-1127
0.048
5
6mer
239-263
0.003
0
6mer
372-394
0.003
0
XLOC_011919
hsa-miR-34c-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024267
Biotype: transcript isomorph
Gene id: XLOC_011919
Gene Name: XLOC_011919
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-117
0.052
Not Conserved
6mer
945-971
0.001
Not Conserved
TSIX
hsa-miR-34c-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
31539-31556
0.035
2
7mer
25386-25410
0.002
1
6mer
590-616
0.002
0
6mer
26223-26241
0.002
1
7mer
17205-17223
0.002
1
6mer
25684-25702
0.002
2
6mer
25307-25324
0.002
1
6mer
24247-24271
0.001
1
6mer
12243-12256
0.001
Not Conserved
6mer
6618-6631
0.001
1
6mer
15313-15336
0.001
Not Conserved
6mer
18432-18458
0.001
1
6mer
25746-25766
0.001
1
6mer
12272-12293
0.000
Not Conserved
RP11-972P1.10
hsa-miR-34c-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610631
Biotype: sense_intronic
Gene id: ENSG00000274427
Gene Name: RP11-972P1.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-96
0.053
0
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