LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
RP11-6I2.3
hsa-miR-34c-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519323
Biotype: lincRNA
Gene id: ENSG00000254288
Gene Name: RP11-6I2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-470
0.062
1
LOC101926935
hsa-miR-34c-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2541-2566
0.021
0
7mer
2732-2748
0.015
0
6mer
5554-5581
0.010
0
6mer
5334-5361
0.006
0
6mer
3047-3071
0.006
0
6mer
2507-2522
0.003
0
6mer
902-924
0.002
Not Conserved
AC008103.4
hsa-miR-34c-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623570
Biotype: sense_intronic
Gene id: ENSG00000279987
Gene Name: AC008103.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-234
0.039
1
7mer
578-598
0.023
1
LINC00278
hsa-miR-34c-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000444263
Biotype: lincRNA
Gene id: ENSG00000231535
Gene Name: LINC00278
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-483
0.062
2
CTD-3049M7.1
hsa-miR-34c-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553818
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
235-259
0.056
0
6mer
382-392
0.003
1
6mer
290-310
0.003
1
LINC00638
hsa-miR-34c-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555578
Biotype: lincRNA
Gene id: ENSG00000258701
Gene Name: LINC00638
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-94
0.032
1
6mer
2111-2134
0.012
1
6mer
1221-1236
0.009
1
6mer
1748-1772
0.007
1
MIR4313
hsa-miR-34c-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1267-1290
0.020
0
6mer
2481-2504
0.010
1
6mer
552-575
0.009
1
6mer
1730-1745
0.009
1
6mer
1586-1609
0.006
1
6mer
2246-2261
0.004
0
6mer
2077-2088
0.001
Not Conserved
RP11-142C4.6
hsa-miR-34c-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033853.2
Biotype: antisense
Gene id: NR_033853.2 (gene)
Gene Name: RP11-142C4.6
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-63
0.050
1
6mer
199-226
0.003
1
7mer
981-1003
0.003
0
7mer
1307-1323
0.003
0
XLOC_013278
hsa-miR-34c-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1287-1306
0.030
0
6mer
1357-1379
0.016
0
6mer
593-612
0.012
0
AC006129.1
hsa-miR-34c-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599770
Biotype: lincRNA
Gene id: ENSG00000268355
Gene Name: AC006129.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-453
0.059
Not Conserved
LINC01224
hsa-miR-34c-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2184-2202
0.013
1
6mer
1685-1709
0.012
1
6mer
1269-1293
0.010
1
6mer
1609-1624
0.008
1
6mer
948-969
0.006
1
6mer
1187-1209
0.005
1
6mer
1489-1508
0.003
0
6mer
787-804
0.002
0
LINC01287
hsa-miR-34c-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416982
Biotype: lincRNA
Gene id: ENSG00000234722
Gene Name: LINC01287
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
611-626
0.022
0
6mer
939-956
0.015
0
7mer
1582-1601
0.015
0
6mer
909-919
0.005
0
7mer
1553-1567
0.001
Not Conserved
XLOC_006122
hsa-miR-34c-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-471
0.045
0
6mer
316-336
0.008
0
6mer
80-105
0.006
0
VLDLR-AS1
hsa-miR-34c-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000599229
Biotype: antisense
Gene id: ENSG00000236404
Gene Name: VLDLR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
880-898
0.028
11
7mer
1243-1261
0.024
4
6mer
219-235
0.006
1
RP11-142C4.6
hsa-miR-34c-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533954
Biotype: antisense
Gene id: ENSG00000255240
Gene Name: RP11-142C4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-63
0.049
1
6mer
199-226
0.003
1
7mer
981-1003
0.003
0
7mer
1307-1323
0.003
0
RP1-45N11.1
hsa-miR-34c-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569865
Biotype: lincRNA
Gene id: ENSG00000260271
Gene Name: RP1-45N11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1250-1267
0.057
8
XLOC_012833
hsa-miR-34c-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026507
Biotype: transcript isomorph
Gene id: XLOC_012833
Gene Name: XLOC_012833
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1895-1920
0.051
7
6mer
2373-2395
0.004
4
6mer
1381-1396
0.002
1
RP11-34P13.13
hsa-miR-34c-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4734-4748
0.015
1
6mer
4599-4616
0.012
1
6mer
3999-4025
0.009
1
6mer
3335-3357
0.007
1
6mer
4603-4625
0.004
0
6mer
2456-2475
0.003
1
6mer
2365-2388
0.003
1
6mer
2501-2523
0.002
0
RP11-247I13.8
hsa-miR-34c-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000439588
Biotype: antisense
Gene id: ENSG00000224623
Gene Name: RP11-247I13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-210
0.056
13
AC092535.3
hsa-miR-34c-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000417557
Biotype: antisense
Gene id: ENSG00000227189
Gene Name: AC092535.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1966-1983
0.034
1
7mer
25-50
0.015
1
6mer
1183-1206
0.004
2
6mer
355-375
0.002
1
6mer
405-432
0.001
0
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