LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
RP11-760D2.1
hsa-miR-34c-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436042
Biotype: lincRNA
Gene id: ENSG00000225488
Gene Name: RP11-760D2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
559-573
0.059
1
6mer
136-154
0.008
0
6mer
23-45
0.006
0
RP11-441O15.3
hsa-miR-34c-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416191
Biotype: lincRNA
Gene id: ENSG00000224934
Gene Name: RP11-441O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
82-103
0.033
5
8mer
1489-1511
0.016
1
8mer
217-240
0.010
1
6mer
2121-2146
0.004
2
6mer
282-296
0.003
2
6mer
232-247
0.003
1
6mer
2549-2575
0.003
1
6mer
2579-2601
0.002
1
RP11-255A11.2
hsa-miR-34c-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420315
Biotype: antisense
Gene id: ENSG00000228072
Gene Name: RP11-255A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
97-115
0.073
0
RP11-433J8.2
hsa-miR-34c-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556669
Biotype: lincRNA
Gene id: ENSG00000258979
Gene Name: RP11-433J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-428
0.072
2
AC074183.4
hsa-miR-34c-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439105
Biotype: lincRNA
Gene id: ENSG00000232019
Gene Name: AC074183.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-221
0.036
0
7mer
107-129
0.024
0
6mer
245-270
0.012
0
XLOC_013274
hsa-miR-34c-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3-28
0.008
0
6mer
1547-1573
0.007
1
6mer
5457-5476
0.006
1
6mer
3375-3395
0.006
1
6mer
2731-2750
0.006
1
6mer
1185-1210
0.006
1
6mer
3852-3877
0.005
1
6mer
5306-5320
0.005
1
6mer
5023-5039
0.005
1
6mer
4952-4971
0.004
1
6mer
5964-5977
0.003
0
6mer
1114-1140
0.003
1
6mer
3301-3327
0.003
1
6mer
3826-3840
0.002
1
6mer
5960-5977
0.002
0
RP11-6N17.9
hsa-miR-34c-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582262
Biotype: processed_transcript
Gene id: ENSG00000263798
Gene Name: RP11-6N17.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
437-456
0.070
7
CTD-2017D11.1
hsa-miR-34c-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1714-1733
0.014
1
6mer
1421-1447
0.013
1
6mer
518-544
0.013
1
6mer
1492-1518
0.010
1
6mer
891-910
0.009
1
6mer
1204-1227
0.006
1
6mer
1140-1162
0.005
0
FOXN3-AS2
hsa-miR-34c-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554071
Biotype: antisense
Gene id: ENSG00000259073
Gene Name: FOXN3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-58
0.065
7
6mer
660-676
0.005
5
ARHGAP5-AS1
hsa-miR-34c-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_027263.1
Biotype: antisense
Gene id: NR_027263.1 (gene)
Gene Name: ARHGAP5-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
564-581
0.021
1
8mer
428-444
0.019
3
7mer
56-82
0.018
6
7mer
1135-1155
0.007
0
6mer
366-381
0.003
1
6mer
1128-1144
0.001
Not Conserved
RP11-693J15.5
hsa-miR-34c-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5437-5452
0.020
3
8mer
602-622
0.018
0
9mer
8170-8191
0.011
0
7mer
8457-8469
0.005
0
7mer
4479-4492
0.003
1
6mer
5613-5636
0.003
6
6mer
2932-2958
0.003
2
6mer
3775-3791
0.003
4
6mer
6651-6664
0.001
1
6mer
8325-8340
0.001
0
6mer
6559-6573
0.001
0
6mer
6385-6412
0.001
0
6mer
2976-2999
0.001
0
RP11-15H20.6
hsa-miR-34c-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397094
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1904-1918
0.016
1
6mer
1930-1955
0.015
1
6mer
1453-1473
0.013
1
6mer
809-828
0.009
1
6mer
654-670
0.008
1
6mer
1379-1405
0.008
1
TTTY15
hsa-miR-34c-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417071
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-91
0.033
0
6mer
688-705
0.021
0
6mer
703-727
0.014
0
LINC01359
hsa-miR-34c-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447748
Biotype: lincRNA
Gene id: ENSG00000226891
Gene Name: LINC01359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-166
0.060
2
6mer
2584-2610
0.004
0
6mer
799-812
0.003
1
XLOC_006513
hsa-miR-34c-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013877
Biotype: transcript isomorph
Gene id: XLOC_006513
Gene Name: XLOC_006513
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-224
0.035
0
7mer
110-132
0.020
0
6mer
248-273
0.012
0
XLOC_002576
hsa-miR-34c-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005945
Biotype: transcript isomorph
Gene id: XLOC_002576
Gene Name: XLOC_002576
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
20-47
0.066
0
RP11-157H4.1
hsa-miR-34c-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000625150
Biotype: sense_intronic
Gene id: ENSG00000279463
Gene Name: RP11-157H4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
73-95
0.063
4
AC006116.19
hsa-miR-34c-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591936
Biotype: sense_intronic
Gene id: ENSG00000267298
Gene Name: AC006116.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-54
0.063
0
XLOC_008826
hsa-miR-34c-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-102
0.025
0
7mer
4369-4392
0.018
0
7mer
3361-3384
0.010
0
6mer
4334-4350
0.005
0
6mer
3869-3892
0.004
0
RP4-782L23.2
hsa-miR-34c-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443012
Biotype: antisense
Gene id: ENSG00000226883
Gene Name: RP4-782L23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
598-623
0.049
5
7mer
117-134
0.013
2
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