LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-34c-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP13-348B13.2
hsa-miR-34c-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420327
Biotype: lincRNA
Gene id: ENSG00000225012
Gene Name: RP13-348B13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-177
0.093
4
XLOC_013708
hsa-miR-34c-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
871-897
0.050
0
6mer
34-53
0.015
0
6mer
1291-1310
0.013
0
6mer
1251-1278
0.011
0
AP001442.2
hsa-miR-34c-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000597894
Biotype: antisense
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-57
0.080
2
6mer
374-394
0.005
0
6mer
168-188
0.004
1
XLOC_005501
hsa-miR-34c-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
473-488
0.079
1
6mer
579-601
0.009
1
RP11-15H20.6
hsa-miR-34c-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
264-278
0.019
1
6mer
2452-2471
0.016
1
6mer
383-409
0.014
1
6mer
2523-2539
0.014
1
6mer
875-895
0.010
1
6mer
801-827
0.006
1
6mer
1352-1377
0.006
1
6mer
1326-1340
0.003
1
XLOC_005623
hsa-miR-34c-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012093
Biotype: transcript isomorph
Gene id: XLOC_005623
Gene Name: XLOC_005623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
141-162
0.071
0
6mer
37-63
0.017
0
RP11-529E10.6
hsa-miR-34c-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564650
Biotype: sense_overlapping
Gene id: ENSG00000261643
Gene Name: RP11-529E10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-63
0.087
0
RP11-15L13.4
hsa-miR-34c-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608818
Biotype: antisense
Gene id: ENSG00000272910
Gene Name: RP11-15L13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-122
0.087
11
XLOC_012997
hsa-miR-34c-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1596-1614
0.073
1
6mer
1130-1149
0.008
1
6mer
223-245
0.005
0
LINC00960
hsa-miR-34c-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-37
0.033
1
7mer
1972-1987
0.025
1
6mer
302-321
0.014
1
6mer
362-384
0.008
1
6mer
1106-1128
0.005
0
XLOC_006126
hsa-miR-34c-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013478
Biotype: transcript isomorph
Gene id: XLOC_006126
Gene Name: XLOC_006126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
811-832
0.033
0
6mer
96-122
0.018
0
6mer
795-822
0.017
0
6mer
720-746
0.014
0
6mer
238-264
0.002
Not Conserved
6mer
167-193
0.001
Not Conserved
MIR6818
hsa-miR-34c-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33299-33320
0.022
2
7mer
38651-38678
0.008
2
7mer
6576-6602
0.006
1
7mer
482-501
0.005
0
7mer
23819-23842
0.005
1
7mer
20203-20226
0.002
3
6mer
18752-18773
0.002
4
6mer
46454-46473
0.002
5
6mer
312-338
0.002
0
6mer
16670-16692
0.002
2
6mer
39474-39495
0.002
5
7mer
46872-46889
0.002
1
6mer
42963-42978
0.002
1
6mer
34088-34105
0.001
2
6mer
316-340
0.001
0
6mer
39696-39718
0.001
1
6mer
40161-40180
0.001
0
6mer
36735-36755
0.001
Not Conserved
6mer
20966-20988
0.001
1
6mer
43854-43873
0.001
2
6mer
44657-44678
0.001
0
6mer
42553-42579
0.001
1
6mer
22345-22365
0.001
1
6mer
47512-47527
0.001
1
6mer
45248-45269
0.001
Not Conserved
6mer
20199-20212
0.001
3
7mer
2657-2675
0.001
Not Conserved
6mer
6453-6476
0.001
1
6mer
21281-21307
0.001
0
6mer
3029-3054
0.001
0
6mer
29617-29638
0.001
1
6mer
20835-20848
0.001
0
6mer
2653-2675
0.000
0
RP11-203B7.2
hsa-miR-34c-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000570186
Biotype: lincRNA
Gene id: ENSG00000260303
Gene Name: RP11-203B7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-418
0.040
0
8mer
335-357
0.026
0
6mer
3699-3721
0.006
4
6mer
4126-4146
0.006
0
6mer
1989-1999
0.002
3
LL22NC03-86G7.1
hsa-miR-34c-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25081-25105
0.010
1
8mer
19013-19032
0.004
2
8mer
13674-13696
0.003
1
8mer
3864-3882
0.003
1
7mer
28578-28602
0.002
1
7mer
2691-2711
0.002
2
6mer
32402-32425
0.002
1
7mer
32633-32652
0.002
1
7mer
3787-3809
0.002
0
6mer
34466-34492
0.002
1
6mer
356-377
0.002
1
6mer
13379-13401
0.002
2
6mer
30786-30809
0.002
1
6mer
36692-36715
0.002
2
6mer
28199-28226
0.002
1
6mer
13585-13599
0.002
0
6mer
30200-30216
0.001
1
6mer
2226-2240
0.001
3
6mer
10935-10957
0.001
1
6mer
20835-20861
0.001
1
6mer
15376-15389
0.001
1
6mer
30939-30957
0.001
3
6mer
22302-22325
0.001
0
6mer
15084-15109
0.001
1
6mer
994-1019
0.001
1
6mer
15841-15853
0.001
0
6mer
14326-14350
0.001
1
6mer
17076-17094
0.001
1
8mer
15396-15408
0.001
0
6mer
20680-20705
0.001
1
7mer
9417-9440
0.001
0
6mer
7396-7416
0.001
1
6mer
2583-2605
0.001
1
6mer
11668-11690
0.001
1
6mer
18294-18313
0.001
1
6mer
26201-26226
0.001
1
6mer
17850-17876
0.001
0
6mer
12652-12678
0.001
0
6mer
20995-21007
0.001
3
6mer
8783-8810
0.001
1
6mer
5238-5264
0.001
1
6mer
30991-31016
0.001
1
6mer
26660-26677
0.001
1
6mer
13901-13922
0.001
0
6mer
9963-9982
0.001
0
6mer
14462-14482
0.001
1
7mer
28644-28666
0.001
Not Conserved
6mer
11799-11816
0.001
0
6mer
14872-14897
0.001
1
6mer
14056-14082
0.001
1
6mer
24272-24295
0.001
1
6mer
13934-13948
0.000
1
6mer
7396-7420
0.000
0
6mer
8852-8878
0.000
1
6mer
18294-18317
0.000
1
6mer
14069-14086
0.000
1
6mer
8797-8819
0.000
1
6mer
24280-24299
0.000
1
XLOC_010921
hsa-miR-34c-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022619
Biotype: transcript isomorph
Gene id: XLOC_010921
Gene Name: XLOC_010921
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-346
0.076
2
AP001476.4
hsa-miR-34c-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000429512
Biotype: lincRNA
Gene id: ENSG00000228235
Gene Name: AP001476.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-187
0.014
0
7mer
215-236
0.008
Not Conserved
6mer
370-387
0.008
0
6mer
337-354
0.007
0
6mer
272-289
0.007
0
6mer
301-321
0.007
0
7mer
378-400
0.007
Not Conserved
7mer
345-367
0.006
Not Conserved
7mer
254-269
0.006
Not Conserved
7mer
312-334
0.006
Not Conserved
RP3-323A16.1
hsa-miR-34c-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51693-51715
0.006
1
7mer
522-535
0.005
1
8mer
31627-31647
0.004
1
8mer
50469-50489
0.004
0
7mer
1248-1269
0.004
1
8mer
23944-23970
0.003
1
6mer
299-321
0.003
1
7mer
31315-31338
0.003
0
6mer
44368-44390
0.002
2
6mer
39585-39609
0.002
1
6mer
35710-35727
0.002
3
6mer
36962-36973
0.002
4
6mer
13356-13369
0.002
1
6mer
1049-1071
0.001
0
6mer
6669-6686
0.001
0
6mer
45723-45747
0.001
1
6mer
810-831
0.001
0
6mer
42838-42859
0.001
1
6mer
33902-33928
0.001
0
6mer
13915-13930
0.001
1
6mer
11186-11203
0.001
1
7mer
5396-5408
0.001
0
6mer
50418-50443
0.001
1
6mer
51319-51339
0.001
1
6mer
21617-21639
0.001
1
6mer
52335-52355
0.001
0
6mer
28305-28320
0.001
0
6mer
16999-17014
0.001
1
6mer
945-966
0.001
0
6mer
3738-3760
0.001
0
6mer
40382-40395
0.001
0
6mer
24264-24282
0.001
0
6mer
42925-42948
0.001
1
6mer
5238-5256
0.001
0
6mer
42340-42356
0.001
0
6mer
12229-12247
0.001
1
6mer
22055-22068
0.001
Not Conserved
7mer
17038-17059
0.001
0
6mer
43515-43542
0.001
0
6mer
21881-21908
0.001
Not Conserved
6mer
1344-1365
0.001
Not Conserved
6mer
33563-33590
0.001
0
6mer
17316-17335
0.001
0
6mer
17184-17209
0.001
1
6mer
31530-31555
0.001
1
6mer
23975-23986
0.000
1
6mer
43548-43568
0.000
0
6mer
33596-33616
0.000
0
6mer
5238-5260
0.000
0
LINC00662
hsa-miR-34c-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590677
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-481
0.074
0
AP001442.2
hsa-miR-34c-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000600590
Biotype: antisense
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-51
0.067
2
6mer
301-321
0.004
1
6mer
507-527
0.003
0
DISC1FP1
hsa-miR-34c-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000562245
Biotype: lincRNA
Gene id: ENSG00000261645
Gene Name: DISC1FP1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
681-704
0.074
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept