LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
SORCS3-AS1
hsa-miR-34c-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449805
Biotype: antisense
Gene id: ENSG00000226387
Gene Name: SORCS3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-62
0.040
3
6mer
623-642
0.003
1
LINC00598
hsa-miR-34c-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_024506.1
Biotype: lincRNA
Gene id: NR_024506.1 (gene)
Gene Name: LINC00598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1193-1215
0.009
1
8mer
3452-3468
0.007
1
6mer
3473-3489
0.005
3
7mer
501-525
0.004
1
6mer
3663-3685
0.003
1
6mer
2709-2728
0.003
0
6mer
365-381
0.002
0
6mer
3288-3309
0.002
2
6mer
1329-1340
0.002
3
6mer
3689-3714
0.002
0
6mer
3693-3714
0.001
0
6mer
2589-2616
0.001
0
6mer
1321-1336
0.001
1
RP1-104O17.1
hsa-miR-34c-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433637
Biotype: lincRNA
Gene id: ENSG00000224849
Gene Name: RP1-104O17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-298
0.033
6
6mer
334-359
0.009
5
XLOC_003440
hsa-miR-34c-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2129-2143
0.016
1
6mer
2962-2982
0.008
1
6mer
2691-2715
0.005
1
6mer
1311-1333
0.004
1
6mer
931-944
0.003
0
6mer
528-541
0.003
0
6mer
2294-2307
0.003
1
RP11-46E17.6
hsa-miR-34c-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000440477
Biotype: lincRNA
Gene id: ENSG00000227880
Gene Name: RP11-46E17.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-359
0.037
0
6mer
474-500
0.005
0
XLOC_011030
hsa-miR-34c-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022750
Biotype: transcript isomorph
Gene id: XLOC_011030
Gene Name: XLOC_011030
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-372
0.028
0
7mer
236-252
0.014
0
RP4-669L17.10
hsa-miR-34c-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028325.1
Biotype: lincRNA
Gene id: NR_028325.1 (gene)
Gene Name: RP4-669L17.10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-362
0.006
1
6mer
3782-3801
0.003
1
6mer
4026-4043
0.003
0
6mer
4058-4075
0.003
1
6mer
3918-3936
0.002
0
6mer
403-426
0.002
0
6mer
752-778
0.002
0
6mer
537-553
0.002
0
6mer
558-585
0.002
0
6mer
925-941
0.002
0
6mer
1072-1099
0.001
0
6mer
2034-2056
0.001
Not Conserved
6mer
2921-2940
0.001
0
6mer
988-1004
0.001
0
6mer
2289-2311
0.001
0
6mer
1302-1327
0.001
Not Conserved
6mer
1009-1036
0.001
0
6mer
1814-1830
0.001
0
6mer
1410-1426
0.001
Not Conserved
6mer
2631-2650
0.001
0
6mer
2395-2418
0.001
Not Conserved
6mer
1745-1761
0.001
0
6mer
2521-2547
0.001
Not Conserved
6mer
1597-1616
0.000
0
6mer
1558-1581
0.000
Not Conserved
6mer
1311-1331
0.000
Not Conserved
6mer
1711-1729
0.000
Not Conserved
6mer
1491-1517
0.000
Not Conserved
6mer
2530-2551
0.000
Not Conserved
LINC00598
hsa-miR-34c-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_024507.1
Biotype: lincRNA
Gene id: NR_024507.1 (gene)
Gene Name: LINC00598
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1193-1215
0.009
1
8mer
3590-3606
0.007
1
6mer
3611-3627
0.005
3
7mer
501-525
0.004
1
6mer
3801-3823
0.003
1
6mer
2709-2728
0.002
0
6mer
3426-3447
0.002
2
6mer
365-381
0.002
0
6mer
1329-1340
0.002
3
6mer
3827-3852
0.002
0
6mer
3831-3852
0.001
0
6mer
2589-2616
0.001
0
6mer
1321-1336
0.001
1
LINC01366
hsa-miR-34c-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518357
Biotype: lincRNA
Gene id: ENSG00000235172
Gene Name: LINC01366
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-323
0.029
0
8mer
662-688
0.013
0
AC096669.3
hsa-miR-34c-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443205
Biotype: lincRNA
Gene id: ENSG00000224568
Gene Name: AC096669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1519-1535
0.020
0
9mer
366-383
0.019
1
6mer
80-92
0.003
0
AP001442.2
hsa-miR-34c-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456904
Biotype: antisense
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-548
0.042
2
AC068039.4
hsa-miR-34c-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1640-1664
0.016
0
6mer
1430-1452
0.011
0
6mer
692-703
0.009
0
6mer
761-779
0.006
0
RP1-309I22.2
hsa-miR-34c-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23945-23959
0.005
4
6mer
27769-27783
0.003
4
6mer
25556-25575
0.002
6
6mer
4117-4143
0.002
1
6mer
14328-14345
0.002
4
7mer
26717-26738
0.002
1
7mer
13131-13144
0.002
1
6mer
9407-9431
0.002
3
6mer
26501-26525
0.002
2
6mer
16480-16503
0.001
Not Conserved
6mer
1413-1432
0.001
1
6mer
10695-10712
0.001
3
6mer
23394-23420
0.001
4
6mer
7009-7034
0.001
2
6mer
5338-5356
0.001
0
6mer
22437-22458
0.001
1
6mer
3883-3905
0.001
0
6mer
11237-11255
0.001
1
6mer
8253-8273
0.001
1
6mer
18822-18839
0.001
0
6mer
14602-14622
0.001
1
6mer
21638-21659
0.001
1
6mer
16536-16559
0.001
5
6mer
8589-8606
0.001
0
6mer
21905-21929
0.001
Not Conserved
6mer
23424-23446
0.001
2
6mer
12942-12960
0.001
0
6mer
23482-23499
0.001
2
6mer
24025-24043
0.000
0
6mer
13000-13023
0.000
1
6mer
24013-24039
0.000
0
XLOC_005209
hsa-miR-34c-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011744
Biotype: transcript isomorph
Gene id: XLOC_005209
Gene Name: XLOC_005209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-355
0.020
1
7mer
639-651
0.009
0
6mer
669-688
0.007
1
6mer
443-462
0.004
1
6mer
376-394
0.002
0
XLOC_006118
hsa-miR-34c-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013467
Biotype: transcript isomorph
Gene id: XLOC_006118
Gene Name: XLOC_006118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
564-584
0.015
Not Conserved
8mer
5066-5086
0.008
0
6mer
168-192
0.005
0
6mer
330-351
0.004
0
6mer
1516-1534
0.002
Not Conserved
6mer
2609-2625
0.002
Not Conserved
6mer
3987-4012
0.002
0
6mer
3013-3032
0.001
0
6mer
5333-5350
0.001
Not Conserved
6mer
1215-1240
0.001
Not Conserved
6mer
1919-1939
0.001
Not Conserved
XLOC_004495
hsa-miR-34c-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010050
Biotype: transcript isomorph
Gene id: XLOC_004495
Gene Name: XLOC_004495
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-250
0.039
6
6mer
342-364
0.003
1
RP11-673C5.2
hsa-miR-34c-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562634
Biotype: antisense
Gene id: ENSG00000259964
Gene Name: RP11-673C5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1948-1969
0.038
4
7mer
679-701
0.003
2
LINC01128
hsa-miR-34c-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_047525.1
Biotype: lincRNA
Gene id: NR_047525.1 (gene)
Gene Name: LINC01128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5989-6010
0.019
1
6mer
99-126
0.006
1
8mer
3123-3145
0.004
0
6mer
5077-5092
0.003
0
6mer
4415-4428
0.002
1
6mer
903-922
0.002
Not Conserved
6mer
3954-3975
0.002
1
6mer
3533-3556
0.002
1
6mer
3256-3273
0.001
1
RP11-540K16.1
hsa-miR-34c-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435023
Biotype: lincRNA
Gene id: ENSG00000237292
Gene Name: RP11-540K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-118
0.025
0
6mer
50-64
0.009
1
6mer
17-38
0.007
1
XLOC_011974
hsa-miR-34c-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024694
Biotype: transcript isomorph
Gene id: XLOC_011974
Gene Name: XLOC_011974
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-44
0.041
1
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