LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p

ENST00000623644

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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-34a-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
259629-259640
0.023
1
8mer
202219-202245
0.020
0
8mer
8232-8256
0.012
4
8mer
73872-73892
0.012
4
7mer
44089-44104
0.010
1
8mer
160616-160640
0.008
2
8mer
199550-199573
0.008
0
8mer
204872-204886
0.008
1
7mer
93757-93771
0.007
3
8mer
23719-23742
0.007
1
8mer
72007-72021
0.006
Not Conserved
7mer
196055-196074
0.006
3
7mer
123780-123794
0.005
3
7mer
110536-110559
0.005
1
7mer
195222-195243
0.005
3
7mer
29066-29086
0.005
3
7mer
196612-196639
0.005
3
7mer
9886-9913
0.004
2
6mer
206-226
0.004
0
8mer
247044-247070
0.004
0
7mer
57179-57204
0.003
1
7mer
131370-131389
0.003
0
7mer
21267-21281
0.003
1
6mer
126784-126792
0.003
5
7mer
116447-116467
0.003
1
7mer
225968-225989
0.003
3
8mer
222461-222485
0.003
0
7mer
33828-33848
0.002
2
7mer
120502-120520
0.002
2
7mer
42466-42483
0.002
2
7mer
30330-30350
0.002
1
7mer
84437-84456
0.002
0
6mer
186880-186897
0.002
6
6mer
57558-57580
0.002
5
6mer
139128-139142
0.002
0
6mer
119595-119619
0.002
8
7mer
118377-118393
0.002
2
6mer
3254-3277
0.002
6
7mer
194705-194730
0.002
Not Conserved
6mer
238927-238942
0.002
0
8mer
120722-120735
0.002
0
6mer
38521-38537
0.002
1
7mer
138887-138901
0.002
1
7mer
61021-61046
0.002
1
6mer
150099-150114
0.002
8
6mer
136789-136804
0.002
1
6mer
167653-167675
0.002
2
8mer+mismatch
95813-95833
0.002
1
6mer
65555-65576
0.002
0
6mer
88625-88649
0.002
1
6mer
9217-9238
0.002
3
6mer
20724-20749
0.002
9
7mer
23726-23752
0.002
Not Conserved
6mer
34685-34709
0.002
1
7mer
208421-208442
0.002
1
6mer
33386-33405
0.002
7
6mer
97752-97775
0.002
4
6mer
58028-58040
0.002
1
6mer
32520-32546
0.002
3
6mer
36042-36060
0.002
1
6mer
57722-57745
0.002
3
6mer
167076-167090
0.002
2
7mer
84504-84522
0.002
1
6mer
158563-158584
0.002
1
7mer
213997-214012
0.002
4
7mer
184398-184416
0.002
1
6mer
123971-123989
0.001
0
6mer
235753-235769
0.001
2
6mer
74757-74776
0.001
10
6mer
86064-86079
0.001
0
6mer
226732-226744
0.001
0
6mer
91803-91817
0.001
1
6mer
162946-162959
0.001
Not Conserved
6mer
129274-129292
0.001
3
6mer
23902-23922
0.001
1
6mer
246425-246446
0.001
0
6mer
67276-67287
0.001
1
6mer
180104-180122
0.001
3
6mer
159577-159603
0.001
0
6mer
43253-43277
0.001
2
6mer
110642-110664
0.001
7
6mer
195696-195714
0.001
1
6mer
265388-265404
0.001
1
6mer
185898-185922
0.001
0
6mer
650-674
0.001
1
6mer
37839-37865
0.001
1
6mer
208127-208151
0.001
0
6mer
227843-227866
0.001
2
6mer
99667-99685
0.001
1
6mer
220954-220980
0.001
1
6mer
117694-117720
0.001
1
6mer
254249-254266
0.001
1
6mer
216299-216317
0.001
3
6mer
100680-100700
0.001
5
6mer
124362-124386
0.001
3
6mer
87108-87135
0.001
3
6mer
228269-228295
0.001
0
6mer
184320-184344
0.001
1
6mer
211273-211295
0.001
2
7mer
214192-214216
0.001
1
6mer
188689-188710
0.001
1
6mer
255245-255262
0.001
1
6mer
233014-233035
0.001
1
6mer
6571-6592
0.001
1
6mer
131022-131040
0.001
2
6mer
257762-257773
0.001
3
6mer
136380-136402
0.001
0
6mer
74438-74456
0.001
1
6mer
62390-62417
0.001
2
6mer
162344-162358
0.001
0
6mer
200565-200590
0.001
3
6mer
122813-122824
0.001
0
6mer
241855-241874
0.001
1
6mer
123260-123286
0.001
1
6mer
239390-239411
0.001
0
6mer
70993-71020
0.001
0
6mer
12065-12088
0.001
1
6mer
139400-139416
0.001
1
6mer
21545-21570
0.001
0
6mer
253689-253702
0.001
1
6mer
206823-206849
0.001
1
6mer
68689-68716
0.001
2
6mer
97173-97200
0.001
1
6mer
128594-128613
0.001
2
6mer
30470-30483
0.001
0
6mer
133958-133974
0.001
0
6mer
168807-168827
0.001
0
6mer
97401-97423
0.001
1
6mer
29081-29101
0.001
1
6mer
58166-58193
0.001
2
6mer
137472-137489
0.001
1
6mer
96455-96473
0.001
1
6mer
74585-74608
0.001
4
6mer
111071-111097
0.001
0
6mer
104579-104600
0.001
Not Conserved
6mer
140152-140177
0.001
1
6mer
120609-120628
0.001
3
6mer
212054-212078
0.000
1
6mer
79831-79858
0.000
0
6mer
79908-79919
0.000
0
6mer
222470-222490
0.000
1
6mer
159631-159651
0.000
0
6mer
206839-206865
0.000
1
6mer
87121-87147
0.000
0
6mer
74774-74789
0.000
1
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