LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p

ENST00000501122

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Gene
miRNA
Score
DIANA Links
NEAT1
hsa-miR-34a-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16136-16161
0.007
2
8mer
20775-20798
0.006
1
7mer
10335-10355
0.004
0
7mer
20931-20953
0.003
3
7mer
5976-5994
0.003
1
8mer
4449-4470
0.003
2
7mer
14940-14960
0.003
0
6mer
11698-11714
0.003
3
6mer
235-254
0.002
1
6mer
6462-6483
0.002
1
6mer
21149-21168
0.002
1
6mer
12875-12898
0.001
0
6mer
20322-20340
0.001
1
6mer
4334-4354
0.001
1
6mer
19622-19647
0.001
0
6mer
15199-15211
0.001
0
6mer
11073-11085
0.001
0
6mer
20976-21001
0.001
2
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