LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_002488
hsa-miR-34a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004577
Biotype: transcript isomorph
Gene id: XLOC_002488
Gene Name: XLOC_002488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2106-2127
0.040
3
6mer
344-364
0.004
4
6mer
718-742
0.004
4
6mer
968-994
0.003
2
6mer
1594-1621
0.002
1
XLOC_005209
hsa-miR-34a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011744
Biotype: transcript isomorph
Gene id: XLOC_005209
Gene Name: XLOC_005209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-356
0.045
1
6mer
639-650
0.006
1
6mer
380-401
0.001
0
AC004448.5
hsa-miR-34a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000421796
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
535-557
0.047
1
6mer
492-507
0.005
1
RP11-440L14.1
hsa-miR-34a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503571
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-88
0.040
1
6mer
316-338
0.012
1
RP11-141A19.1
hsa-miR-34a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456002
Biotype: antisense
Gene id: ENSG00000229846
Gene Name: RP11-141A19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
114-138
0.047
0
6mer
48-72
0.004
2
SRD5A3-AS1
hsa-miR-34a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609487
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
694-719
0.052
1
AC009299.2
hsa-miR-34a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610254
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-420
0.052
7
RP11-360F5.1
hsa-miR-34a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509449
Biotype: antisense
Gene id: ENSG00000249207
Gene Name: RP11-360F5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-111
0.052
1
CTD-3049M7.1
hsa-miR-34a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556447
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
39-64
0.046
1
6mer
200-220
0.006
1
POU6F2-AS1
hsa-miR-34a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433519
Biotype: antisense
Gene id: ENSG00000224122
Gene Name: POU6F2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-154
0.049
2
6mer
149-165
0.002
0
RP11-133N21.10
hsa-miR-34a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550644
Biotype: antisense
Gene id: ENSG00000257964
Gene Name: RP11-133N21.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-185
0.047
2
6mer
183-208
0.004
1
SRD5A3-AS1
hsa-miR-34a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595103
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
632-657
0.051
1
XLOC_012006
hsa-miR-34a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024726
Biotype: transcript isomorph
Gene id: XLOC_012006
Gene Name: XLOC_012006
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
352-374
0.051
0
AP001442.2
hsa-miR-34a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000596385
Biotype: antisense
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-276
0.051
2
AC093382.1
hsa-miR-34a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413311
Biotype: lincRNA
Gene id: ENSG00000226276
Gene Name: AC093382.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-216
0.051
Not Conserved
XLOC_004292
hsa-miR-34a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009873
Biotype: transcript isomorph
Gene id: XLOC_004292
Gene Name: XLOC_004292
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-232
0.044
1
6mer
289-315
0.006
3
RP5-1097F14.3
hsa-miR-34a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425559
Biotype: antisense
Gene id: ENSG00000235710
Gene Name: RP5-1097F14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
273-287
0.038
1
7mer
481-496
0.008
1
7mer
1160-1178
0.004
0
CTD-2561J22.5
hsa-miR-34a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600469
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-74
0.042
1
6mer
376-402
0.008
1
XLOC_011746
hsa-miR-34a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024429
Biotype: transcript isomorph
Gene id: XLOC_011746
Gene Name: XLOC_011746
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
49-75
0.050
1
AF131216.6
hsa-miR-34a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000498997
Biotype: antisense
Gene id: ENSG00000246477
Gene Name: AF131216.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3807-3826
0.029
1
7mer
564-583
0.007
0
6mer
211-234
0.005
5
6mer
915-933
0.004
8
7mer
2455-2478
0.002
2
6mer
5121-5146
0.002
Not Conserved
6mer
2043-2066
0.001
1
6mer
1992-2017
0.000
1
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