LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
AC009299.2
hsa-miR-34a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445372
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-430
0.053
7
SHANK3
hsa-miR-34a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6817-6838
0.027
7
8mer
5722-5742
0.016
9
7mer
542-558
0.006
0
8mer+mismatch
4556-4575
0.002
3
8mer
5722-5748
0.002
3
6mer
3112-3131
0.001
4
XLOC_009942
hsa-miR-34a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020640
Biotype: transcript isomorph
Gene id: XLOC_009942
Gene Name: XLOC_009942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
968-989
0.049
0
6mer
1121-1148
0.005
0
LINC00638
hsa-miR-34a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555578
Biotype: lincRNA
Gene id: ENSG00000258701
Gene Name: LINC00638
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-94
0.031
1
7mer
1216-1237
0.016
1
6mer
838-863
0.007
1
RP11-408A13.3
hsa-miR-34a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608871
Biotype: lincRNA
Gene id: ENSG00000273399
Gene Name: RP11-408A13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-22
0.053
7
AC009299.2
hsa-miR-34a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421122
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
802-820
0.053
7
NAV2-AS5
hsa-miR-34a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528726
Biotype: antisense
Gene id: ENSG00000255043
Gene Name: NAV2-AS5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
240-264
0.047
4
6mer
2456-2481
0.002
1
6mer
2258-2279
0.002
2
6mer
1941-1954
0.001
Not Conserved
6mer
2402-2425
0.001
3
RP11-118G23.2
hsa-miR-34a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577546
Biotype: lincRNA
Gene id: ENSG00000264643
Gene Name: RP11-118G23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6-33
0.053
1
AC004448.5
hsa-miR-34a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609249
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
810-832
0.048
1
6mer
767-782
0.005
1
ETV5-AS1
hsa-miR-34a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000453370
Biotype: antisense
Gene id: ENSG00000234197
Gene Name: ETV5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
510-531
0.053
1
AC004448.5
hsa-miR-34a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585389
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-566
0.048
1
6mer
501-516
0.005
1
RP11-441O15.3
hsa-miR-34a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416191
Biotype: lincRNA
Gene id: ENSG00000224934
Gene Name: RP11-441O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-102
0.032
5
7mer
1486-1510
0.008
1
7mer
219-239
0.006
1
6mer
7-33
0.003
1
6mer
1961-1971
0.002
4
6mer
2611-2638
0.002
0
LINC01128
hsa-miR-34a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_047525.1
Biotype: lincRNA
Gene id: NR_047525.1 (gene)
Gene Name: LINC01128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5992-6011
0.040
1
9mer
3123-3146
0.005
0
6mer
5838-5863
0.003
1
8mer+mismatch
2734-2757
0.002
1
6mer
906-923
0.002
Not Conserved
AC024560.2
hsa-miR-34a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
902-924
0.051
0
6mer
262-286
0.002
Not Conserved
XLOC_011693
hsa-miR-34a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
347-372
0.024
0
6mer
1915-1936
0.016
0
8mer
1060-1075
0.007
Not Conserved
7mer
624-640
0.006
Not Conserved
RP11-661A12.7
hsa-miR-34a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529247
Biotype: antisense
Gene id: ENSG00000254741
Gene Name: RP11-661A12.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-398
0.048
1
6mer
317-340
0.005
6
RP11-379P15.1
hsa-miR-34a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2689-2705
0.042
9
6mer
476-502
0.003
1
6mer
907-934
0.002
1
6mer
3007-3031
0.002
3
6mer
1382-1400
0.001
0
6mer
2398-2419
0.001
0
RP11-472N19.3
hsa-miR-34a-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553537
Biotype: lincRNA
Gene id: ENSG00000258481
Gene Name: RP11-472N19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
86-107
0.050
1
6mer
261-281
0.002
1
RP11-326I11.3
hsa-miR-34a-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605834
Biotype: lincRNA
Gene id: ENSG00000271646
Gene Name: RP11-326I11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2424-2445
0.018
0
7mer
2369-2390
0.014
1
8mer
1927-1942
0.011
0
7mer
2284-2305
0.009
2
RP11-447M4.1
hsa-miR-34a-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570082
Biotype: lincRNA
Gene id: ENSG00000260670
Gene Name: RP11-447M4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2919-2945
0.033
1
8mer
706-733
0.019
0
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