LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP11-219D15.3
hsa-miR-34a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608472
Biotype: antisense
Gene id: ENSG00000272656
Gene Name: RP11-219D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
300-317
0.061
0
RP11-1437A8.5
hsa-miR-34a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565415
Biotype: lincRNA
Gene id: ENSG00000261009
Gene Name: RP11-1437A8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-111
0.061
Not Conserved
UBE2Q1-AS1
hsa-miR-34a-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441613
Biotype: antisense
Gene id: ENSG00000229780
Gene Name: UBE2Q1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-406
0.059
0
6mer
299-319
0.003
Not Conserved
CTD-3049M7.1
hsa-miR-34a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553818
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-260
0.056
0
7mer
381-393
0.004
1
AC008103.4
hsa-miR-34a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623570
Biotype: sense_intronic
Gene id: ENSG00000279987
Gene Name: AC008103.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-235
0.034
1
7mer
578-602
0.026
1
RP11-119D9.1
hsa-miR-34a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000511677
Biotype: lincRNA
Gene id: ENSG00000251637
Gene Name: RP11-119D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3284-3307
0.055
5
6mer
88-113
0.002
Not Conserved
6mer
554-565
0.002
Not Conserved
6mer
2079-2099
0.001
Not Conserved
RP11-56L13.1
hsa-miR-34a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566232
Biotype: lincRNA
Gene id: ENSG00000260402
Gene Name: RP11-56L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
175-191
0.059
Not Conserved
6mer
1310-1330
0.001
Not Conserved
LINC00900
hsa-miR-34a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501294
Biotype: lincRNA
Gene id: ENSG00000246100
Gene Name: LINC00900
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
787-804
0.043
3
8mer
820-838
0.016
2
RP11-231I16.1
hsa-miR-34a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548738
Biotype: antisense
Gene id: ENSG00000257279
Gene Name: RP11-231I16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3962-3980
0.048
4
8mer
3956-3980
0.010
0
6mer
2504-2522
0.001
2
RP11-476D10.1
hsa-miR-34a-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000563933
Biotype: lincRNA
Gene id: ENSG00000260943
Gene Name: RP11-476D10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1162-1176
0.032
3
7mer
1601-1627
0.023
0
6mer
1085-1106
0.003
1
RP11-436D23.1
hsa-miR-34a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607823
Biotype: lincRNA
Gene id: ENSG00000271860
Gene Name: RP11-436D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1653-1668
0.042
1
6mer
499-522
0.006
8
6mer
540-558
0.004
7
6mer
1334-1351
0.003
Not Conserved
6mer
758-777
0.002
1
LINC00879
hsa-miR-34a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466089
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-196
0.058
1
RP11-381O7.3
hsa-miR-34a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000426350
Biotype: lincRNA
Gene id: ENSG00000182021
Gene Name: RP11-381O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1503-1529
0.027
0
7mer
1995-2015
0.022
4
7mer
599-610
0.009
Not Conserved
CTC-297N7.9
hsa-miR-34a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579529
Biotype: lincRNA
Gene id: ENSG00000264016
Gene Name: CTC-297N7.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
276-297
0.037
1
7mer
204-226
0.008
0
6mer
34-59
0.005
Not Conserved
6mer
91-118
0.004
Not Conserved
6mer
526-541
0.002
0
6mer
351-372
0.002
Not Conserved
FMR1-AS1
hsa-miR-34a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000594922
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-27
0.032
1
7mer
340-359
0.016
3
7mer
1421-1434
0.007
1
7mer
1863-1884
0.003
0
LOC100506639
hsa-miR-34a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
767-780
0.041
1
6mer
166-191
0.016
1
XLOC_011752
hsa-miR-34a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024435
Biotype: transcript isomorph
Gene id: XLOC_011752
Gene Name: XLOC_011752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-225
0.057
2
AC006116.19
hsa-miR-34a-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591936
Biotype: sense_intronic
Gene id: ENSG00000267298
Gene Name: AC006116.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-55
0.057
0
RP11-470L19.2
hsa-miR-34a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457402
Biotype: lincRNA
Gene id: ENSG00000235407
Gene Name: RP11-470L19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
937-962
0.018
10
7mer
105-125
0.014
1
7mer
441-466
0.009
1
7mer
348-363
0.004
1
7mer
580-602
0.003
2
6mer
251-267
0.003
1
6mer
1427-1453
0.002
Not Conserved
6mer
1680-1705
0.002
1
RP11-328N19.1
hsa-miR-34a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507639
Biotype: lincRNA
Gene id: ENSG00000251350
Gene Name: RP11-328N19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-156
0.013
1
7mer
116-142
0.012
1
7mer
70-84
0.009
0
7mer
22-41
0.009
0
7mer
87-113
0.008
0
7mer
44-70
0.006
Not Conserved
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