LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP3-323A16.1
hsa-miR-34a-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31625-31647
0.008
1
8mer
51700-51715
0.006
1
7mer
50463-50488
0.006
0
7mer
44366-44391
0.006
1
7mer
31312-31339
0.003
0
7mer
23953-23969
0.002
1
6mer
511-534
0.002
1
7mer
12234-12248
0.002
1
6mer
1242-1268
0.002
2
6mer
1048-1071
0.002
1
7mer
28302-28321
0.002
0
6mer
39584-39609
0.002
1
6mer
22782-22803
0.002
0
7mer
17040-17059
0.002
0
6mer
13343-13369
0.002
1
6mer
52970-52991
0.001
0
6mer
51314-51330
0.001
1
6mer
39929-39941
0.001
1
6mer
17609-17628
0.001
1
6mer
41242-41264
0.001
1
6mer
4394-4414
0.001
1
6mer
47338-47355
0.001
1
6mer
45130-45155
0.001
1
6mer
5386-5407
0.001
0
6mer
42338-42356
0.001
0
6mer
45483-45499
0.001
Not Conserved
6mer
50056-50072
0.001
0
6mer
17362-17382
0.001
4
6mer
17316-17336
0.001
Not Conserved
6mer
41275-41294
0.001
1
6mer
5148-5174
0.001
Not Conserved
6mer
23965-23986
0.000
1
RP11-627G23.1
hsa-miR-34a-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
87-104
0.060
0
6mer
3759-3783
0.002
1
6mer
809-832
0.002
2
6mer
3465-3481
0.001
1
6mer
2472-2494
0.001
0
EAF1-AS1
hsa-miR-34a-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595975
Biotype: antisense
Gene id: ENSG00000249786
Gene Name: EAF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-516
0.065
10
XLOC_011919
hsa-miR-34a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024267
Biotype: transcript isomorph
Gene id: XLOC_011919
Gene Name: XLOC_011919
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
92-108
0.064
Not Conserved
6mer
1227-1247
0.001
Not Conserved
RP11-157H4.1
hsa-miR-34a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000625150
Biotype: sense_intronic
Gene id: ENSG00000279463
Gene Name: RP11-157H4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-95
0.065
4
SVIL-AS1
hsa-miR-34a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414457
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1083-1098
0.063
0
6mer
224-244
0.002
1
XLOC_011272
hsa-miR-34a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023429
Biotype: transcript isomorph
Gene id: XLOC_011272
Gene Name: XLOC_011272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-228
0.060
1
6mer
301-316
0.005
1
RP11-56L13.1
hsa-miR-34a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568730
Biotype: lincRNA
Gene id: ENSG00000260402
Gene Name: RP11-56L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-110
0.065
Not Conserved
TTN-AS1
hsa-miR-34a-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419746
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3976-3996
0.060
9
6mer
3051-3070
0.002
9
6mer
2652-2671
0.001
1
6mer
3171-3197
0.001
4
JPX
hsa-miR-34a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000414209
Biotype: lincRNA
Gene id: ENSG00000225470
Gene Name: JPX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2004-2030
0.064
0
RP5-912I13.1
hsa-miR-34a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000569431
Biotype: sense_overlapping
Gene id: ENSG00000260426
Gene Name: RP5-912I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1402-1426
0.059
6
6mer
232-252
0.003
0
6mer
381-406
0.002
0
RP11-247I13.8
hsa-miR-34a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000439588
Biotype: antisense
Gene id: ENSG00000224623
Gene Name: RP11-247I13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-211
0.064
8
RP11-247I13.11
hsa-miR-34a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000483736
Biotype: antisense
Gene id: ENSG00000240591
Gene Name: RP11-247I13.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-211
0.064
8
CTA-796E4.4
hsa-miR-34a-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434510
Biotype: antisense
Gene id: ENSG00000229770
Gene Name: CTA-796E4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-73
0.063
4
MUC19
hsa-miR-34a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24012-24037
0.018
6
7mer
24457-24475
0.014
0
7mer
2059-2081
0.008
2
6mer
24287-24304
0.005
3
8mer
5411-5428
0.005
1
7mer
4465-4490
0.003
1
7mer
2541-2561
0.003
2
7mer
4560-4585
0.002
0
6mer
3865-3875
0.002
4
6mer
3090-3107
0.001
2
6mer
3922-3941
0.001
8
6mer
20727-20740
0.001
0
6mer
3171-3184
0.001
2
RP11-1437A8.5
hsa-miR-34a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570288
Biotype: lincRNA
Gene id: ENSG00000261009
Gene Name: RP11-1437A8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-111
0.062
Not Conserved
6mer
1231-1251
0.001
Not Conserved
XLOC_001931
hsa-miR-34a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004095
Biotype: transcript isomorph
Gene id: XLOC_001931
Gene Name: XLOC_001931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-79
0.056
1
6mer
569-588
0.006
0
LINC00621
hsa-miR-34a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000577004
Biotype: lincRNA
Gene id: ENSG00000262619
Gene Name: LINC00621
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1014-1039
0.062
0
XLOC_009231
hsa-miR-34a-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019958
Biotype: transcript isomorph
Gene id: XLOC_009231
Gene Name: XLOC_009231
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-186
0.058
0
6mer
866-885
0.003
1
PCBP2-OT1
hsa-miR-34a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_109828.1
Biotype: sense
Gene id: NR_109828.1 (gene)
Gene Name: PCBP2-OT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-446
0.053
9
6mer
100-118
0.009
8
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