LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
MIR4534
hsa-miR-34a-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38274-38288
0.005
1
7mer
874-899
0.005
0
8mer
42828-42850
0.005
1
8mer
39005-39029
0.005
3
8mer
25033-25058
0.004
3
8mer
32137-32164
0.004
2
7mer
45706-45726
0.004
1
8mer
20363-20389
0.003
1
7mer
48543-48568
0.003
1
7mer
33059-33080
0.003
1
6mer
40771-40794
0.002
7
7mer
34880-34904
0.002
1
6mer
8522-8536
0.002
3
7mer
47895-47917
0.002
2
7mer
42015-42035
0.002
0
7mer
18670-18688
0.002
1
6mer
51586-51602
0.001
1
6mer
3086-3101
0.001
1
6mer
28911-28930
0.001
0
6mer
45908-45922
0.001
3
6mer
34571-34582
0.001
0
6mer
42069-42090
0.001
3
6mer
36841-36860
0.001
1
7mer
48204-48227
0.001
1
6mer
27170-27192
0.001
1
6mer
48135-48155
0.001
0
7mer
25568-25583
0.001
0
6mer
48386-48412
0.001
0
6mer
13290-13311
0.001
Not Conserved
6mer
19244-19269
0.001
2
6mer
9548-9567
0.001
1
6mer
41156-41180
0.001
0
6mer
49392-49414
0.001
1
7mer
9548-9572
0.001
1
6mer
36352-36374
0.001
0
6mer
18557-18581
0.001
1
6mer
42075-42101
0.001
2
6mer
8587-8602
0.001
2
6mer
31187-31207
0.001
0
6mer
26463-26481
0.001
1
6mer
34726-34744
0.000
1
RP11-50D9.3
hsa-miR-34a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000565254
Biotype: antisense
Gene id: ENSG00000261668
Gene Name: RP11-50D9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-116
0.040
3
7mer
378-394
0.015
2
7mer
470-494
0.010
1
7mer
1065-1090
0.008
3
6mer
3607-3628
0.001
0
XLOC_005623
hsa-miR-34a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012093
Biotype: transcript isomorph
Gene id: XLOC_005623
Gene Name: XLOC_005623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-161
0.073
0
RP1-125I3.2
hsa-miR-34a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455431
Biotype: antisense
Gene id: ENSG00000236528
Gene Name: RP1-125I3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
797-815
0.073
8
LOC100128885
hsa-miR-34a-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
219-231
0.044
1
7mer
4221-4233
0.017
0
6mer
1573-1587
0.003
0
6mer
765-788
0.003
0
6mer
3428-3454
0.003
0
6mer
1163-1184
0.002
0
XLOC_002576
hsa-miR-34a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005945
Biotype: transcript isomorph
Gene id: XLOC_002576
Gene Name: XLOC_002576
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-46
0.072
0
FLJ32255
hsa-miR-34a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104643.1
Biotype: lincRNA
Gene id: NR_104643.1 (gene)
Gene Name: FLJ32255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-525
0.047
1
8mer
268-290
0.024
0
XLOC_001671
hsa-miR-34a-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10087-10100
0.058
0
8mer
8182-8195
0.007
Not Conserved
6mer
244-258
0.003
Not Conserved
6mer
3174-3188
0.001
Not Conserved
6mer
2085-2106
0.001
Not Conserved
6mer
870-890
0.001
Not Conserved
RP4-809F18.2
hsa-miR-34a-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539588
Biotype: lincRNA
Gene id: ENSG00000257061
Gene Name: RP4-809F18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-122
0.070
3
CTA-305I2.1
hsa-miR-34a-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000566572
Biotype: antisense
Gene id: ENSG00000261535
Gene Name: CTA-305I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
561-586
0.064
1
7mer
445-460
0.006
0
RP11-368I23.4
hsa-miR-34a-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609103
Biotype: lincRNA
Gene id: ENSG00000273177
Gene Name: RP11-368I23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-257
0.070
1
LINC00960
hsa-miR-34a-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
302-322
0.030
1
6mer
20-36
0.018
1
6mer
1962-1986
0.015
1
6mer
720-743
0.007
1
FMR1-AS1
hsa-miR-34a-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000598667
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-27
0.042
1
7mer
340-359
0.017
3
7mer
1421-1434
0.007
1
7mer
1599-1620
0.003
0
RP11-282O18.3
hsa-miR-34a-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543217
Biotype: antisense
Gene id: ENSG00000235423
Gene Name: RP11-282O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-493
0.069
6
AC010127.3
hsa-miR-34a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599041
Biotype: antisense
Gene id: ENSG00000236107
Gene Name: AC010127.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-169
0.068
1
RP1-149C7.1
hsa-miR-34a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564251
Biotype: lincRNA
Gene id: ENSG00000261038
Gene Name: RP1-149C7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-789
0.032
0
8mer
524-542
0.027
0
7mer
153-170
0.009
Not Conserved
RP11-203B7.2
hsa-miR-34a-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000570186
Biotype: lincRNA
Gene id: ENSG00000260303
Gene Name: RP11-203B7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
334-353
0.038
0
8mer
397-417
0.027
0
6mer
1511-1531
0.001
0
6mer
1918-1943
0.001
0
RP11-247I13.11
hsa-miR-34a-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000464523
Biotype: antisense
Gene id: ENSG00000240591
Gene Name: RP11-247I13.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-244
0.060
8
6mer
8-32
0.008
10
DISC1FP1
hsa-miR-34a-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000562245
Biotype: lincRNA
Gene id: ENSG00000261645
Gene Name: DISC1FP1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
679-704
0.060
1
6mer
243-268
0.004
0
6mer
280-299
0.002
1
AL157902.3
hsa-miR-34a-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425010
Biotype: antisense
Gene id: ENSG00000236866
Gene Name: AL157902.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
116-133
0.066
1
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