LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP11-433J8.2
hsa-miR-34a-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556669
Biotype: lincRNA
Gene id: ENSG00000258979
Gene Name: RP11-433J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
410-429
0.111
2
RP11-443B7.3
hsa-miR-34a-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000549744
Biotype: lincRNA
Gene id: ENSG00000258082
Gene Name: RP11-443B7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-369
0.062
0
8mer
97-115
0.029
1
9mer
230-251
0.019
1
AC092535.3
hsa-miR-34a-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000417557
Biotype: antisense
Gene id: ENSG00000227189
Gene Name: AC092535.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1962-1984
0.090
1
7mer
25-50
0.015
1
6mer
599-609
0.002
1
6mer
738-762
0.001
1
MIR6818
hsa-miR-34a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
33298-33314
0.043
2
8mer
23818-23845
0.010
1
8mer
481-501
0.009
0
7mer
18751-18773
0.004
3
6mer
40632-40648
0.003
14
6mer
49166-49193
0.003
1
6mer
31474-31496
0.003
5
6mer
38652-38678
0.003
2
6mer
19977-20004
0.002
7
6mer
6577-6594
0.002
1
7mer
46872-46890
0.002
1
6mer
20204-20222
0.002
4
6mer
28298-28309
0.001
6
6mer
42962-42983
0.001
1
6mer
30365-30383
0.001
1
6mer
42103-42128
0.001
3
6mer
42403-42426
0.001
5
6mer
28653-28675
0.001
1
6mer
25862-25879
0.001
3
6mer
38238-38259
0.001
3
6mer
42740-42753
0.001
1
6mer
46172-46196
0.001
2
6mer
41423-41446
0.001
4
6mer
7357-7375
0.001
0
6mer
1942-1964
0.001
0
6mer
28525-28549
0.001
1
6mer
8333-8346
0.001
1
6mer
45118-45135
0.001
0
6mer
11040-11058
0.001
Not Conserved
6mer
3126-3152
0.001
0
6mer
2658-2676
0.001
0
XLOC_012370
hsa-miR-34a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1315-1335
0.105
0
LINC00278
hsa-miR-34a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000444263
Biotype: lincRNA
Gene id: ENSG00000231535
Gene Name: LINC00278
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
468-484
0.103
2
XLOC_012833
hsa-miR-34a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026507
Biotype: transcript isomorph
Gene id: XLOC_012833
Gene Name: XLOC_012833
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1894-1918
0.101
7
LL22NC03-2H8.4
hsa-miR-34a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412149
Biotype: lincRNA
Gene id: ENSG00000234630
Gene Name: LL22NC03-2H8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-189
0.099
0
KB-1592A4.14
hsa-miR-34a-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417463
Biotype: lincRNA
Gene id: ENSG00000234503
Gene Name: KB-1592A4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-64
0.097
1
LINC01515
hsa-miR-34a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600848
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
716-743
0.095
0
CTBP1-AS2
hsa-miR-34a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1647-1668
0.081
1
6mer
2021-2045
0.012
1
6mer
1722-1742
0.002
0
LINC01490
hsa-miR-34a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548705
Biotype: lincRNA
Gene id: ENSG00000257741
Gene Name: LINC01490
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-486
0.093
1
XLOC_005377
hsa-miR-34a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012543
Biotype: transcript isomorph
Gene id: XLOC_005377
Gene Name: XLOC_005377
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-370
0.081
5
7mer
416-440
0.012
0
AP001442.2
hsa-miR-34a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000597894
Biotype: antisense
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-57
0.093
2
RP11-6I2.3
hsa-miR-34a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519323
Biotype: lincRNA
Gene id: ENSG00000254288
Gene Name: RP11-6I2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
452-471
0.092
1
CTD-3105H18.13
hsa-miR-34a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-29
0.092
Not Conserved
AC004951.6
hsa-miR-34a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-69
0.088
0
AC006548.28
hsa-miR-34a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48149-48161
0.008
Not Conserved
9mer
41695-41718
0.008
1
8mer
35658-35677
0.006
1
9mer
12820-12842
0.005
Not Conserved
7mer
84070-84093
0.005
1
7mer
10459-10479
0.004
0
7mer
60733-60759
0.002
1
6mer
11112-11137
0.002
1
6mer
81043-81066
0.002
1
6mer
70406-70424
0.002
0
6mer
56011-56032
0.002
Not Conserved
7mer
21201-21223
0.002
Not Conserved
6mer
28445-28462
0.002
1
6mer
13084-13103
0.001
0
6mer
45015-45041
0.001
1
6mer
59939-59962
0.001
1
7mer
34604-34622
0.001
Not Conserved
6mer
3684-3710
0.001
1
6mer
7174-7187
0.001
1
6mer
20577-20593
0.001
1
6mer
61527-61553
0.001
1
6mer
38734-38755
0.001
0
7mer
22346-22363
0.001
0
6mer
68443-68460
0.001
0
6mer
3853-3866
0.001
0
6mer
17718-17745
0.001
1
6mer
14082-14103
0.001
1
6mer
82281-82305
0.001
Not Conserved
6mer
15723-15748
0.001
1
6mer
83208-83225
0.001
1
6mer
69440-69467
0.001
Not Conserved
6mer
39411-39436
0.001
Not Conserved
6mer
2729-2744
0.001
2
6mer
61715-61732
0.001
1
6mer
68973-68994
0.001
0
6mer
19580-19602
0.001
0
6mer
41704-41730
0.001
1
6mer
36508-36524
0.001
2
6mer
4184-4204
0.001
0
6mer
40558-40580
0.001
1
6mer
5353-5372
0.001
1
6mer
13537-13560
0.001
1
6mer
5947-5974
0.001
1
7mer
14040-14064
0.001
Not Conserved
6mer
7825-7845
0.001
1
6mer
65533-65548
0.001
Not Conserved
7mer
59934-59952
0.001
1
6mer
72109-72136
0.001
Not Conserved
CTC-487M23.5
hsa-miR-34a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602872
Biotype: antisense
Gene id: ENSG00000270067
Gene Name: CTC-487M23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-158
0.086
1
SORCS3-AS1
hsa-miR-34a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449805
Biotype: antisense
Gene id: ENSG00000226387
Gene Name: SORCS3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-65
0.082
3
6mer
705-729
0.002
1
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