LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34a-5p


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Gene
miRNA
Score
DIANA Links
RP4-756G23.5
hsa-miR-34a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000451176
Biotype: antisense
Gene id: ENSG00000235513
Gene Name: RP4-756G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-254
0.031
4
7mer
112-135
0.019
7
SHANK3
hsa-miR-34a-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7032-7053
0.026
7
8mer
5937-5957
0.015
9
7mer
769-785
0.005
0
8mer+mismatch
4744-4763
0.002
3
8mer
5937-5963
0.001
3
6mer
3300-3319
0.001
4
C10orf32-ASMT
hsa-miR-34a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_037644.1
Biotype: sense
Gene id: NR_037644.1 (gene)
Gene Name: C10orf32-ASMT
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1087-1104
0.033
7
7mer
2589-2605
0.010
1
7mer
959-983
0.007
3
LINC00900
hsa-miR-34a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499809
Biotype: lincRNA
Gene id: ENSG00000246100
Gene Name: LINC00900
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3142-3160
0.040
3
6mer
400-425
0.005
5
6mer
1021-1047
0.002
0
6mer
2337-2360
0.001
2
6mer
1847-1867
0.001
0
6mer
1592-1609
0.001
0
LINC01128
hsa-miR-34a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445118
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6108-6127
0.035
1
9mer
3239-3262
0.005
0
6mer
5954-5979
0.003
1
8mer+mismatch
2850-2873
0.002
1
6mer
43-68
0.002
Not Conserved
6mer
1022-1039
0.002
Not Conserved
RP11-360A18.1
hsa-miR-34a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000454204
Biotype: lincRNA
Gene id: ENSG00000225960
Gene Name: RP11-360A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-114
0.050
2
AC105760.2
hsa-miR-34a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418430
Biotype: antisense
Gene id: ENSG00000227252
Gene Name: AC105760.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13-34
0.044
Not Conserved
6mer
374-395
0.002
1
6mer
702-717
0.002
0
6mer
813-839
0.001
Not Conserved
RP6-102O10.1
hsa-miR-34a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422038
Biotype: lincRNA
Gene id: ENSG00000227935
Gene Name: RP6-102O10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
685-705
0.050
3
KCNA3
hsa-miR-34a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566942
Biotype: lincRNA
Gene id: ENSG00000259834
Gene Name: KCNA3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1200-1213
0.042
4
6mer
746-766
0.005
3
6mer
3037-3061
0.003
2
FAM224A
hsa-miR-34a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-237
0.043
0
6mer
884-907
0.006
0
CNOT10-AS1
hsa-miR-34a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475395
Biotype: antisense
Gene id: ENSG00000251224
Gene Name: CNOT10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-204
0.046
2
6mer
160-187
0.004
2
AC009299.2
hsa-miR-34a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435692
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-489
0.049
7
LINC00945
hsa-miR-34a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000453716
Biotype: lincRNA
Gene id: ENSG00000232539
Gene Name: LINC00945
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
711-737
0.049
8
AC006129.1
hsa-miR-34a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599770
Biotype: lincRNA
Gene id: ENSG00000268355
Gene Name: AC006129.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-453
0.046
Not Conserved
6mer
510-523
0.003
Not Conserved
CTA-342B11.3
hsa-miR-34a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19126-19143
0.022
0
7mer
867-883
0.014
2
8mer
5488-5500
0.008
2
7mer
21329-21356
0.002
Not Conserved
6mer
7609-7630
0.002
1
6mer
3961-3988
0.001
0
6mer
5725-5752
0.001
1
XLOC_014106
hsa-miR-34a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029162
Biotype: transcript isomorph
Gene id: XLOC_014106
Gene Name: XLOC_014106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-273
0.038
1
7mer
265-287
0.011
0
SRD5A3-AS1
hsa-miR-34a-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595734
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
802-827
0.048
1
LINC01251
hsa-miR-34a-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444956
Biotype: antisense
Gene id: ENSG00000233776
Gene Name: LINC01251
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-186
0.033
1
8mer
162-178
0.015
0
LINC01251
hsa-miR-34a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000422764
Biotype: antisense
Gene id: ENSG00000233776
Gene Name: LINC01251
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-186
0.033
1
8mer
162-178
0.015
0
RP11-757G1.6
hsa-miR-34a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34a-5p
Sequence: uggcagugucuuagcugguugu
MirBase ID: MIMAT0000255
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
990-1011
0.028
0
8mer+mismatch
274-292
0.020
0
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