LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
AC073254.1
hsa-miR-345-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415506
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
475-490
0.018
4
7mer
169-186
0.015
6
6mer
618-631
0.002
0
C22orf34
hsa-miR-345-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000343999
Biotype: lincRNA
Gene id: ENSG00000188511
Gene Name: C22orf34
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-569
0.010
0
6mer
192-216
0.005
0
6mer
2514-2540
0.004
0
6mer
2476-2495
0.003
0
6mer
2360-2379
0.002
0
6mer
2437-2456
0.002
0
6mer
2398-2417
0.002
0
6mer
2321-2341
0.002
0
6mer
2283-2302
0.002
0
6mer
2001-2026
0.002
1
6mer
1176-1200
0.001
0
6mer
1020-1044
0.001
1
RP4-717I23.3
hsa-miR-345-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447577
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-119
0.035
4
SNHG15
hsa-miR-345-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000579383
Biotype: lincRNA
Gene id: ENSG00000232956
Gene Name: SNHG15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-198
0.035
2
CLYBL-AS2
hsa-miR-345-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_046526.1
Biotype: antisense
Gene id: NR_046526.1 (gene)
Gene Name: CLYBL-AS2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
379-397
0.035
4
CLYBL-AS2
hsa-miR-345-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000430125
Biotype: antisense
Gene id: ENSG00000227659
Gene Name: CLYBL-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-414
0.035
4
XLOC_010856
hsa-miR-345-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022532
Biotype: transcript isomorph
Gene id: XLOC_010856
Gene Name: XLOC_010856
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3390-3409
0.021
7
6mer
350-366
0.007
5
6mer
508-533
0.004
1
7mer
1821-1848
0.002
2
6mer
1767-1787
0.001
2
CTD-3187F8.14
hsa-miR-345-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600074
Biotype: antisense
Gene id: ENSG00000269072
Gene Name: CTD-3187F8.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-133
0.015
3
7mer
788-813
0.006
1
7mer
1591-1612
0.006
0
6mer
148-163
0.003
0
8mer
1309-1332
0.003
0
6mer
944-963
0.001
0
MIR142
hsa-miR-345-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579003
Biotype: antisense
Gene id: ENSG00000265206
Gene Name: MIR142
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1199-1219
0.012
3
8mer
479-499
0.006
2
8mer
1151-1165
0.006
1
8mer
1054-1069
0.004
0
8mer+wobble
909-923
0.003
1
8mer+wobble
1102-1116
0.002
1
8mer+wobble
957-971
0.001
1
6mer
854-868
0.001
1
XLOC_001627
hsa-miR-345-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002980
Biotype: transcript isomorph
Gene id: XLOC_001627
Gene Name: XLOC_001627
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-122
0.031
1
6mer
163-187
0.004
0
XLOC_006469
hsa-miR-345-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014311
Biotype: transcript isomorph
Gene id: XLOC_006469
Gene Name: XLOC_006469
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-409
0.026
1
6mer
31-43
0.009
1
LOC148696
hsa-miR-345-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026817.1
Biotype: lincRNA
Gene id: NR_026817.1 (gene)
Gene Name: LOC148696
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3946-3969
0.027
5
7mer
1509-1530
0.006
1
6mer
3350-3372
0.002
2
XLOC_002938
hsa-miR-345-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006322
Biotype: transcript isomorph
Gene id: XLOC_002938
Gene Name: XLOC_002938
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1202-1225
0.035
2
LINC00086
hsa-miR-345-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000417443
Biotype: lincRNA
Gene id: ENSG00000178947
Gene Name: LINC00086
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5140-5162
0.020
0
7mer
4588-4608
0.009
2
6mer
3217-3243
0.002
1
6mer
2790-2810
0.002
3
6mer
2404-2428
0.001
0
6mer
2091-2118
0.001
0
AP001092.4
hsa-miR-345-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000433606
Biotype: antisense
Gene id: ENSG00000237410
Gene Name: AP001092.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-310
0.031
1
6mer
104-129
0.004
0
RP11-126H7.4
hsa-miR-345-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000372387
Biotype: antisense
Gene id: ENSG00000204049
Gene Name: RP11-126H7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-228
0.019
0
7mer
1741-1763
0.008
2
8mer
1736-1758
0.008
1
LL22NC03-86G7.1
hsa-miR-345-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6327-6351
0.013
1
8mer
26541-26563
0.004
1
6mer
37262-37282
0.003
1
7mer
1682-1704
0.002
0
6mer
29311-29332
0.002
1
7mer
36787-36806
0.002
1
6mer
953-979
0.002
0
6mer
36196-36208
0.001
0
6mer
18129-18153
0.001
1
6mer
21944-21968
0.001
2
6mer
21255-21280
0.001
1
6mer
11391-11401
0.001
1
8mer+wobble
2300-2317
0.001
0
6mer
23121-23136
0.001
1
6mer
12959-12979
0.001
0
6mer
28268-28288
0.001
0
XLOC_005081
hsa-miR-345-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010554
Biotype: transcript isomorph
Gene id: XLOC_005081
Gene Name: XLOC_005081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3888-3903
0.033
5
6mer
2808-2834
0.001
0
APCDD1L-AS1
hsa-miR-345-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000427140
Biotype: lincRNA
Gene id: ENSG00000231290
Gene Name: APCDD1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-104
0.025
2
7mer
936-961
0.008
3
6mer
1573-1595
0.002
1
RP11-400D2.3
hsa-miR-345-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503009
Biotype: lincRNA
Gene id: ENSG00000251291
Gene Name: RP11-400D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-150
0.034
1
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