LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
SNHG17
hsa-miR-345-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449469
Biotype: retained_intron
Gene id: ENSG00000196756
Gene Name: SNHG17
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1805-1831
0.025
1
7mer
1337-1356
0.007
1
6mer
479-506
0.005
2
RP11-244B22.6
hsa-miR-345-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1668-1690
0.021
0
6mer
505-528
0.013
0
6mer
1266-1289
0.002
Not Conserved
XLOC_000052
hsa-miR-345-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000839
Biotype: transcript isomorph
Gene id: XLOC_000052
Gene Name: XLOC_000052
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1651-1662
0.033
3
8mer
345-364
0.003
1
RP1-5O6.6
hsa-miR-345-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624867
Biotype: sense_intronic
Gene id: ENSG00000279038
Gene Name: RP1-5O6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6505-6522
0.034
5
6mer
5798-5819
0.002
1
6mer
4936-4957
0.001
1
RP11-445N18.7
hsa-miR-345-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427229
Biotype: processed_transcript
Gene id: ENSG00000243349
Gene Name: RP11-445N18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-388
0.032
2
7mer
1892-1913
0.005
0
XLOC_004670
hsa-miR-345-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010853
Biotype: transcript isomorph
Gene id: XLOC_004670
Gene Name: XLOC_004670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
276-297
0.034
Not Conserved
6mer
627-651
0.002
Not Conserved
RP11-203B9.4
hsa-miR-345-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590164
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-538
0.036
1
RP11-10A14.9
hsa-miR-345-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623764
Biotype: lincRNA
Gene id: ENSG00000279949
Gene Name: RP11-10A14.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-254
0.036
5
XLOC_006911
hsa-miR-345-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014847
Biotype: transcript isomorph
Gene id: XLOC_006911
Gene Name: XLOC_006911
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1022-1042
0.036
0
AC005330.2
hsa-miR-345-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590086
Biotype: lincRNA
Gene id: ENSG00000267372
Gene Name: AC005330.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1116-1130
0.026
1
6mer
1053-1076
0.010
1
NAV2-AS4
hsa-miR-345-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033989.1
Biotype: antisense
Gene id: NR_033989.1 (gene)
Gene Name: NAV2-AS4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-257
0.036
4
AC092669.6
hsa-miR-345-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412313
Biotype: lincRNA
Gene id: ENSG00000225815
Gene Name: AC092669.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-291
0.030
4
6mer
819-837
0.006
1
XLOC_011150
hsa-miR-345-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022896
Biotype: transcript isomorph
Gene id: XLOC_011150
Gene Name: XLOC_011150
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-164
0.036
1
LINC00937
hsa-miR-345-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537659
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-269
0.023
0
8mer
423-439
0.012
0
RP11-1437A8.4
hsa-miR-345-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563960
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-849
0.036
0
RP11-203B9.4
hsa-miR-345-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589394
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-325
0.036
1
SNHG15
hsa-miR-345-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585030
Biotype: lincRNA
Gene id: ENSG00000232956
Gene Name: SNHG15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-198
0.036
2
XLOC_005798
hsa-miR-345-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012240
Biotype: transcript isomorph
Gene id: XLOC_005798
Gene Name: XLOC_005798
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-170
0.016
2
7mer
430-452
0.016
1
6mer
607-630
0.003
1
LINC00922
hsa-miR-345-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569736
Biotype: lincRNA
Gene id: ENSG00000261742
Gene Name: LINC00922
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-432
0.031
2
6mer
1208-1223
0.005
4
SNHG15
hsa-miR-345-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000580458
Biotype: lincRNA
Gene id: ENSG00000232956
Gene Name: SNHG15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-190
0.035
2
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