LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
RP11-392P7.6
hsa-miR-345-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545914
Biotype: antisense
Gene id: ENSG00000247498
Gene Name: RP11-392P7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-100
0.033
4
7mer
9-31
0.009
1
XLOC_001489
hsa-miR-345-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002901
Biotype: transcript isomorph
Gene id: XLOC_001489
Gene Name: XLOC_001489
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-82
0.041
0
RP11-227G15.12
hsa-miR-345-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000625127
Biotype: antisense
Gene id: ENSG00000279762
Gene Name: RP11-227G15.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1951-1968
0.021
9
8mer
1830-1857
0.020
9
FLJ37505
hsa-miR-345-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614177
Biotype: lincRNA
Gene id: ENSG00000256597
Gene Name: FLJ37505
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-47
0.027
1
6mer
99-121
0.004
0
6mer
507-528
0.003
1
6mer
1688-1714
0.003
Not Conserved
6mer
410-425
0.003
0
RP11-756P10.2
hsa-miR-345-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514297
Biotype: lincRNA
Gene id: ENSG00000250626
Gene Name: RP11-756P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-575
0.033
2
6mer
1391-1412
0.004
2
6mer
1382-1395
0.003
2
XLOC_007690
hsa-miR-345-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2893-2910
0.020
0
7mer
133-150
0.016
0
6mer
782-809
0.004
0
XLOC_010885
hsa-miR-345-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022566
Biotype: transcript isomorph
Gene id: XLOC_010885
Gene Name: XLOC_010885
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-514
0.034
0
7mer
230-246
0.006
0
SPACA6P
hsa-miR-345-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000331594
Biotype: pseudogene
Gene id: ENSG00000182310
Gene Name: SPACA6P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
746-768
0.010
0
7mer
573-594
0.009
1
7mer
710-728
0.009
0
7mer
668-691
0.008
0
6mer
462-485
0.004
0
SLC25A5-AS1
hsa-miR-345-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000395539
Biotype: retained_intron
Gene id: ENSG00000224281
Gene Name: SLC25A5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-260
0.040
2
RP11-203B9.4
hsa-miR-345-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589312
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-367
0.040
1
CFLAR-AS1
hsa-miR-345-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601974
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-101
0.040
5
GAS5
hsa-miR-345-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454813
Biotype: retained_intron
Gene id: ENSG00000234741
Gene Name: GAS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-412
0.040
1
AC002398.12
hsa-miR-345-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587767
Biotype: antisense
Gene id: ENSG00000267328
Gene Name: AC002398.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-628
0.039
9
RP11-180C1.1
hsa-miR-345-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507759
Biotype: lincRNA
Gene id: ENSG00000250038
Gene Name: RP11-180C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-254
0.039
1
XLOC_006079
hsa-miR-345-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013003
Biotype: transcript isomorph
Gene id: XLOC_006079
Gene Name: XLOC_006079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1260-1279
0.010
0
7mer
2039-2050
0.007
1
7mer
1920-1947
0.006
0
6mer
1134-1152
0.005
1
6mer
161-177
0.004
0
7mer
2156-2183
0.004
0
6mer
161-186
0.003
0
XLOC_010191
hsa-miR-345-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020911
Biotype: transcript isomorph
Gene id: XLOC_010191
Gene Name: XLOC_010191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-473
0.028
0
6mer
406-429
0.011
0
TPT1-AS1
hsa-miR-345-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000434849
Biotype: retained_intron
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1706-1724
0.022
0
7mer
177-201
0.012
1
6mer
180-205
0.005
2
RP11-1007G5.2
hsa-miR-345-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525706
Biotype: antisense
Gene id: ENSG00000254588
Gene Name: RP11-1007G5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1238-1255
0.036
2
6mer
572-595
0.003
1
RP11-430L3.1
hsa-miR-345-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524858
Biotype: lincRNA
Gene id: ENSG00000254819
Gene Name: RP11-430L3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-104
0.036
1
6mer
49-69
0.003
1
RP6-91H8.2
hsa-miR-345-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000561794
Biotype: lincRNA
Gene id: ENSG00000259907
Gene Name: RP6-91H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-167
0.039
1
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