LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
RP11-546K22.3
hsa-miR-345-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607201
Biotype: lincRNA
Gene id: ENSG00000272024
Gene Name: RP11-546K22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-30
0.044
1
RP11-1020A11.1
hsa-miR-345-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602411
Biotype: sense_intronic
Gene id: ENSG00000269894
Gene Name: RP11-1020A11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
367-388
0.026
1
6mer
199-220
0.007
2
6mer
287-303
0.006
1
6mer
348-371
0.005
1
RP11-538I12.2
hsa-miR-345-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569032
Biotype: antisense
Gene id: ENSG00000261063
Gene Name: RP11-538I12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-61
0.044
1
ZBED3-AS1
hsa-miR-345-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512001
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1107-1122
0.037
2
7mer
1183-1199
0.005
1
6mer
1194-1207
0.002
0
STAU2-AS1
hsa-miR-345-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522703
Biotype: antisense
Gene id: ENSG00000253302
Gene Name: STAU2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.043
8
RP4-717I23.3
hsa-miR-345-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415150
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-123
0.043
4
CITF22-24E5.1
hsa-miR-345-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417792
Biotype: antisense
Gene id: ENSG00000234979
Gene Name: CITF22-24E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-194
0.043
8
RP11-342D11.2
hsa-miR-345-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451530
Biotype: antisense
Gene id: ENSG00000238258
Gene Name: RP11-342D11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-648
0.038
3
6mer
78-91
0.005
1
SNHG15
hsa-miR-345-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000578968
Biotype: lincRNA
Gene id: ENSG00000232956
Gene Name: SNHG15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-201
0.043
2
RP11-329B9.1
hsa-miR-345-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000457449
Biotype: lincRNA
Gene id: ENSG00000229433
Gene Name: RP11-329B9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2357-2378
0.043
6
RP11-805L22.3
hsa-miR-345-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577970
Biotype: lincRNA
Gene id: ENSG00000263567
Gene Name: RP11-805L22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-382
0.030
0
6mer
122-148
0.013
0
AP005135.2
hsa-miR-345-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532071
Biotype: lincRNA
Gene id: ENSG00000255512
Gene Name: AP005135.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-89
0.043
0
XLOC_013064
hsa-miR-345-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-342
0.017
1
7mer
2250-2276
0.014
1
6mer
584-607
0.008
1
8mer+wobble
885-906
0.004
0
RP11-507B12.2
hsa-miR-345-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559783
Biotype: lincRNA
Gene id: ENSG00000259616
Gene Name: RP11-507B12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-355
0.042
9
RP4-671O14.7
hsa-miR-345-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1811-1824
0.013
2
8mer
15261-15282
0.005
1
7mer
16423-16443
0.004
1
7mer
12970-12983
0.003
2
7mer
7026-7046
0.003
0
7mer
11933-11955
0.003
0
7mer
10450-10465
0.002
Not Conserved
7mer
14966-14985
0.002
0
7mer
4579-4605
0.002
0
6mer
4341-4353
0.001
1
6mer
3973-3997
0.001
1
6mer
8866-8882
0.001
0
6mer
14036-14062
0.001
0
TRPC7-AS2
hsa-miR-345-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513958
Biotype: antisense
Gene id: ENSG00000250947
Gene Name: TRPC7-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
679-697
0.036
2
6mer
571-596
0.006
2
GS1-204I12.4
hsa-miR-345-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569292
Biotype: lincRNA
Gene id: ENSG00000261729
Gene Name: GS1-204I12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-350
0.042
1
LINC00570
hsa-miR-345-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417473
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-249
0.021
0
7mer
163-185
0.021
2
XLOC_003100
hsa-miR-345-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006498
Biotype: transcript isomorph
Gene id: XLOC_003100
Gene Name: XLOC_003100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6319-6340
0.024
2
6mer
6116-6126
0.008
4
7mer
4685-4703
0.004
1
7mer
2692-2705
0.002
0
6mer
3916-3941
0.002
1
6mer
4403-4423
0.002
1
LINC00342
hsa-miR-345-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448494
Biotype: lincRNA
Gene id: ENSG00000232931
Gene Name: LINC00342
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-208
0.022
1
7mer
646-670
0.020
1
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