LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
RP11-663N22.1
hsa-miR-345-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581944
Biotype: lincRNA
Gene id: ENSG00000265246
Gene Name: RP11-663N22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
575-597
0.048
5
XLOC_011403
hsa-miR-345-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023589
Biotype: transcript isomorph
Gene id: XLOC_011403
Gene Name: XLOC_011403
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
283-309
0.048
1
TSIX
hsa-miR-345-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9339-9358
0.012
0
7mer
12090-12115
0.007
Not Conserved
7mer
25653-25673
0.007
0
7mer
16900-16919
0.004
0
8mer
4163-4179
0.004
0
6mer
36707-36714
0.003
0
6mer
29811-29832
0.003
4
6mer
30491-30506
0.002
2
6mer
28100-28126
0.002
1
6mer
12662-12684
0.002
Not Conserved
6mer
21676-21702
0.001
0
6mer
13985-14009
0.001
Not Conserved
RP4-717I23.3
hsa-miR-345-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446528
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-125
0.047
4
AC092159.3
hsa-miR-345-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439196
Biotype: antisense
Gene id: ENSG00000233970
Gene Name: AC092159.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-436
0.046
1
XLOC_004058
hsa-miR-345-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007818
Biotype: transcript isomorph
Gene id: XLOC_004058
Gene Name: XLOC_004058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-344
0.046
3
RP11-243A14.1
hsa-miR-345-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564305
Biotype: lincRNA
Gene id: ENSG00000261617
Gene Name: RP11-243A14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-310
0.039
1
7mer
867-886
0.004
0
6mer
4187-4207
0.003
2
CTD-2337I7.1
hsa-miR-345-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534593
Biotype: lincRNA
Gene id: ENSG00000255345
Gene Name: CTD-2337I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
610-632
0.046
1
AC005703.2
hsa-miR-345-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000453339
Biotype: lincRNA
Gene id: ENSG00000237377
Gene Name: AC005703.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-89
0.046
2
RP11-80F22.4
hsa-miR-345-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567902
Biotype: lincRNA
Gene id: ENSG00000261445
Gene Name: RP11-80F22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-508
0.046
0
RP11-477N3.1
hsa-miR-345-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606436
Biotype: lincRNA
Gene id: ENSG00000272156
Gene Name: RP11-477N3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-414
0.040
3
7mer
433-454
0.006
0
AC004538.3
hsa-miR-345-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000599875
Biotype: antisense
Gene id: ENSG00000230333
Gene Name: AC004538.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-205
0.031
1
7mer
493-516
0.014
1
DPH6-AS1
hsa-miR-345-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501169
Biotype: lincRNA
Gene id: ENSG00000248079
Gene Name: DPH6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1348-1365
0.045
1
SLC25A5-AS1
hsa-miR-345-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000446986
Biotype: lincRNA
Gene id: ENSG00000224281
Gene Name: SLC25A5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-260
0.045
2
ZBED3-AS1
hsa-miR-345-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515356
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1414-1429
0.037
2
7mer
1490-1506
0.005
1
6mer
1501-1514
0.002
0
RP11-90D11.1
hsa-miR-345-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519366
Biotype: lincRNA
Gene id: ENSG00000253872
Gene Name: RP11-90D11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1639-1661
0.044
4
LINC01194
hsa-miR-345-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513051
Biotype: lincRNA
Gene id: ENSG00000248131
Gene Name: LINC01194
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-608
0.044
1
RP4-717I23.3
hsa-miR-345-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455474
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-120
0.044
4
LINC00846
hsa-miR-345-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1610-1629
0.044
1
C21orf54
hsa-miR-345-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000451980
Biotype: lincRNA
Gene id: ENSG00000229086
Gene Name: C21orf54
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-240
0.044
2
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